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Protein Overview: retr-1

General Information:
Name(s) found: retr-1 / CE41402 [WormBase]
Description(s) found:
Found 12 descriptions.
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  • WBGene00018416 locus:retr-1 Retrotransposon-like protein 1 status:Confirmed UniProt:P34431 protein_id:CCD71231.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 517 amino acids

    Gene Ontology:
    Cellular Component: proteinaceous extracellular matrix [IEALink to PubMed article]
    Biological Process: proteolysis [IEALink to PubMed article]
    DNA integration [IEALink to PubMed article]
    RNA-dependent DNA replication [IEALink to PubMed article]
    cell adhesion [IEALink to PubMed article]
    blood coagulation [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    DNA binding [IEALink to PubMed article]
    RNA-directed DNA polymerase activity [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]
    aspartic-type endopeptidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVNEGQDTE GGSSRAQTLT PPPNPQQQLY DEEDLLRESM DTTEKTFENG FQIQKEQIRQ  60
   61 HLQDSSQRGT AEDAETQKMK QFLDTNELHN MASDSWAMMR EEIMEKRETN RDLNRQLKEK 120
  121 SEELMQKSQI LVETTLKLKA VEEERDKRKK EEQFREADAR SNNYARKDHG YKMHNIELKN 180
  181 EYTSTTYRCR YICRCALKPC MFNMTLVPEA HTPSPTQLYR MYCIMEKSGN RKIDPKQLMA 240
  241 MSSRPLPSPL QITLPDKMMD NLFKDMIGCS SLWTYVAELG WENSYNRYVD KLLNENCGDI 300
  301 LNGPGTMLIL ADGLRLEDLP VSTKNCFVCT DYDEETLIAL QKKCCRERFK MIVLVIPFTI 360
  361 DVELVDCWNR LIAKISEETK ILVVSNMTPD ELEDHALLVE FTSILQKCRR VDDGYLEIIS 420
  421 LHDRLEAHPR KTLEMTALAG KVEYWKAVQT RAKEVGMEWK AFELKRCTSD TPVKNSDCEA 480
  481 STSMKSASTV RTFEDRMVKR GNHNRVYHHF TPYGRKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..195] PSI-BLAST 20.0 Heavy meromyosin subfragment
    2 View Details [196..296] PSI-BLAST 6.045757 No description for 2repA was found.
    3 View Details [297..517] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle