Protein Overview: MMP13_RAT

General Information:
Name(s) found:	MMP13_RAT [Swiss-Prot]
Description(s) found: SHOW ONLY BEST	gi\|203499\|gb\|AAA72124.1\| collagenase [NCBI NR] gi\|116872\|sp\|P23097.1\|MMP13_RAT RecName: Full=Collagenase 3; AltName: Full=Matrix metalloproteinase-13; Short=MMP-13; AltName: Full=UMRCASE; Flags: Precursor [NCBI NR] pir\|\|A23685 interstitial collagenase (EC 3.4.24.7) precursor - rat (fragment) [NCBI NR] Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 PE=1 SV=1 [Swiss-Prot] (P23097) Collagenase 3 precursor (EC 3.4.24.-) (Matrix metalloproteinase-13) (MMP-13) (UMRCASE) (Fragment) [Swiss-Prot] interstitial collagenase (EC 3.4.24.7) precursor - rat (fragment)gi\|203499\|gb\|AAA72124.1\| collagenasegi\|116872\|sp\|P23097\|MM13_RAT Collagenase 3 precursor (Matrix metalloproteinase-13) (MMP-13) (UMRCASE) [nrdb_11152004_Chlamydomonas] Collagenase 3 precursor (Matrix metalloproteinase-13) (MMP-13) (UMRCASE) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] collagenase [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Collagenase 3 (Fragment) OS=Rattus norvegicus GN=Mmp13 [011711_HMR.fasta]
Organism:	Rattus norvegicus
Length:	466 amino acids
Gene Ontology:
Cellular Component:	intercellular canaliculus [IDA] extracellular space [IDA] fibrillar collagen [IDA] Golgi apparatus [IDA] extracellular region [IEA] proteinaceous extracellular matrix [IEA] lysosome [IDA]
Biological Process:	response to hypoxia [IEP] peptide catabolic process [IDA] response to estrogen stimulus [IEP] bone mineralization [UNKNOWN][IEA] ossification [IEP] proteolysis [IDA] metabolic process [IEA] collagen catabolic process [UNKNOWN][IEA] receptor internalization [IGI] embryonic hindlimb morphogenesis [IEP] response to mechanical stimulus [IEP] cartilage development [UNKNOWN][IEA]
Molecular Function:	zinc ion binding [IDA] low-density lipoprotein receptor binding [IPI] calcium ion binding [IDA] fibronectin binding [IPI] calcium-dependent protein binding [IDA] peptidase activity [UNKNOWN][IEA] metalloendopeptidase activity [UNKNOWN][IDA]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATFFLLSWTH CWSLPLPYGD DDDDDLSEED LEFAEHYLKS YYHPVTLAGI LKKSTVTSTV  60
   61 DRLREMQSFF GLDVTGKLDD PTLDIMRKPR CGVPDVGVYN VFPRTLKWSQ TNLTYRIVNY 120
  121 TPDISHSEVE KAFRKAFKVW SDVTPLNFTR IHDGTADIMI SFGTKEHGDF YPFDGPSGLL 180
  181 AHAFPPGPNL GGDAHFDDDE TWTSSSKGYN LFIVAAHELG HSLGLDHSKD PGALMFPIYT 240
  241 YTGKSHFMLP DDDVQGIQSL YGPGDEDPNP KHPKTPEKCD PALSLDAITS LRGETMIFKD 300
  301 RFFWRLHPQQ VEPELFLTKS FWPELPNHVD AAYEHPSRDL MFIFRGRKFW ALNGYDIMEG 360
  361 YPRKISDLGF PKEVKRLSAA VHFEDTGKTL FFSGNHVWSY DDANQTMDKD YPRLIEEEFP 420
  421 GIGDKVDAVY EKNGYIYFFN GPIQFEYSIW SNRIVRVMPT NSLLWC

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: MMP13_RAT

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: