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Protein Overview: gi|151944013

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..189] PSI-BLAST 23.69897 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
2 View Details [190..287] MSA 2.200996 View MSA. No confident structure predictions are available.
3 View Details [288..359] deduced N/A Confident ab initio structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • RNA binding
  • 5.18414740305744 bayes_pls_golite062009
  • exoribonuclease activity
  • 4.57899887224013 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 4.54136587416505 bayes_pls_golite062009
  • ribonuclease activity
  • 4.53127626527286 bayes_pls_golite062009
  • structural constituent of ribosome
  • 3.89236528662255 bayes_pls_golite062009
  • mRNA binding
  • 3.82977088614136 bayes_pls_golite062009
  • nucleic acid binding
  • 3.68444148122352 bayes_pls_golite062009
  • structural molecule activity
  • 3.54418030121155 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 3.40736445988244 bayes_pls_golite062009
  • binding
  • 2.8667878224392 bayes_pls_golite062009
  • 1.63970610538963 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
  • 1.62417180482862 bayes_pls_golite062009
  • 3'-5' exonuclease activity
  • 1.55351486913613 bayes_pls_golite062009
  • transcription regulator activity
  • 1.43703138180882 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
  • 1.42151567812515 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 1.35850109411274 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 1.35845277283398 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 1.35845277283398 bayes_pls_golite062009
  • exonuclease activity
  • 1.25488463068335 bayes_pls_golite062009
  • DNA binding
  • 1.20852534725468 bayes_pls_golite062009
  • exoribonuclease II activity
  • 1.18248519339188 bayes_pls_golite062009
  • protein binding
  • 0.934192915895039 bayes_pls_golite062009
  • hydrolase activity
  • 0.704891843968224 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.489176583045793 bayes_pls_golite062009
  • transcription factor activity
  • 0.386248501195543 bayes_pls_golite062009
  • ligase activity
  • 0.346041081217685 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.32222928997178 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.30467150200016 bayes_pls_golite062009
  • catalytic activity
  • 0.161830442565647 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
  • 0.151650064901878 bayes_pls_golite062009
  • translation initiation factor activity
  • 0.11625379846973 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.1069917291606 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle