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Protein Overview: SO4267

General Information:
Name(s) found: SO4267 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • type I restriction-modification system R subunit [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 1188 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDTQGQST EKDSANFSFL KPYDPIFIDL ACSAERAFTS DPNTTLIKLR QLGEAMAQDI  60
   61 AARCGIEFDD KTTQADLLFK INRELTLEPV VRQLFHALRI EGNKATHQFR TQHKEALEGL 120
  121 KLARSLAIWF HHTFGDQKTA FKAGPFVPPE DPSKQLQELQ TQIELLRSEL NDNHQQLADN 180
  181 QQLTTLLARE KEEYAVLAEQ MDAEARALSK LAAQHEQALV AQKHQFELRI KALQAELVQL 240
  241 AQVDNQAATK NKKQLSQQAS KAGNHIELNE ELTRVLIDQQ LIEAGWIADS QRLDFRKGTR 300
  301 PEKGKNLAIA EWITWHKGKK GRADYVLFCG LIPVAVVEAK KENTHVAGKI SQAERYSKGY 360
  361 KLIAPQQGAW EIEGRTVAWA DDADGHYHIP FVYSCNGREF NKQLAELSGT WFRDTRKPSN 420
  421 TKRALQQFHS PDGLLDKLKR SREAAEQTLQ QEGFDYLGLR DYQQKAIAAV ESALAQDNTQ 480
  481 CLLAMATGTG KTRTIIGLMY RFLKAERFRR ILFLVDRTAL GEQACDSFDE AKLEQNKVLS 540
  541 SIYNIAELGD MKSEAETRIQ VATVQAMVKR IFMSDNPPPL DEFDCIIVDE AHRGYALDQQ 600
  601 MTEGELATRD ASQYLSSYRR VLDYFDAVRI GLTATPAKHT SEIFGKPVYT YSYREAVAGD 660
  661 WLIDHEPPIR YETLLNKHGI KFEKGETVTS INTQTGEIET ADLEDELKFD VESFNKRVIT 720
  721 ESFNEVICQE LIKELDPFGD EKTMIFCATD VHADMVKRLL DKAFLDMYGD DYNQAAVAKI 780
  781 TGQSDKVSQL IRQYKNERYP NIAITVDLLS TGIDVPKICH LVFLRRVKSR ILYEQMMGRA 840
  841 TRRCDDIGKT AFKIYDPVDI YSALEAVNTM KPIVKDPNIT LEQLVDELTD DTFLERALNT 900
  901 PGEQVGAGAD SHTNSHAHDV LNQLGQKVMR VMRKATKKAE NKPELKAKLE QLEELWGVAP 960
  961 AKLHQHLHQI GPREAAQFFK QHQSLINQLA EVRYLVGSDS MPLIYEGRDE FIERQQNYGI1020
 1021 HEKPADYLES FSHFIKQNIN QSAALSVVVN RPKDLTRAQL KEVKLLLDEA GYSEAHLQSA1080
 1081 WRKNTNQDIA ASIIGYIRQA ALDEALIPFA QRVNNAMQRI YSEHDWNPNQ RKWLDRLAKQ1140
 1141 LVHEAVIDKA FVNNRFASDG GAKRFNSVLN DQLDTILDEL NAYLWQVG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1003] PSI-BLAST 79.69897 Crystal structure of Escherichia coli transcription-repair coupling factor
    2 View Details [1004..1188] PSI-BLAST 69.39794 Nucleotide excision repair enzyme UvrB

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • binding
    		•  1.41264401383678 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.1653223755451 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.923452757551011 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.923391844349459 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.920821955769652 bayes_pls_golite062009
  • nucleotide binding
    		•  0.917754212279227 bayes_pls_golite062009
  • helicase activity
    		•  0.895387263223335 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.8104901979223 bayes_pls_golite062009
  • ATP binding
    		•  0.60527666756293 bayes_pls_golite062009
  • adenyl ribonucleotide binding
    		•  0.573214556107072 bayes_pls_golite062009
  • adenyl nucleotide binding
    		•  0.554530910579109 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.216266069700019 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  0.156322124775303 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.0398638249772338 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle