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Protein Overview: CDX1_RAT

General Information:
Name(s) found: CDX1_RAT [Swiss-Prot]
Description(s) found:
Found 10 descriptions.
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  • Homeobox protein CDX-1 (Fragment) OS=Rattus norvegicus GN=Cdx1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Rattus norvegicus
    Length: 123 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: multicellular organismal development [IEA]
    anterior/posterior pattern formation [UNKNOWN][IEA]
    bone morphogenesis [UNKNOWN][IEA]
    regulation of transcription, DNA-dependent [IEA]
    pattern specification process [UNKNOWN][IEA]
    positive regulation of transcription from RNA polymerase II promoter [UNKNOWN][IEA]
    Molecular Function: transcription factor activity [IEA][TAS]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTRTKDKYRV VYTDHQRLEL EKEFHYSRYI TIRRKSELAA NLGLTERQVK IWFQNRRAKE  60
   61 RKVNKKKQQQ QQQQQQQPMP PTQLPLPLDG TPTPSGHPGS LCPTNAGLLG TPSPVPVKEE 120
  121 FLP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] PSI-BLAST 21.522879 DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE ANTENNAPEDIA HOMEODOMAIN FROM DROSOPHILA IN SOLUTION BY 1H NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.57523737355937 bayes_pls_golite062009
  • DNA binding
    		•  3.00143272905695 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.89825020286436 bayes_pls_golite062009
  • transcription factor activity
    		•  2.53664874743748 bayes_pls_golite062009
  • binding
    		•  1.68817361068715 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.56629498736977 bayes_pls_golite062009
  • transcription activator activity
    		•  1.26247803652791 bayes_pls_golite062009
  • protein binding
    		•  1.16239587634422 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.14821760889085 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.20862059645422 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle