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Protein Overview: col-108

General Information:
Name(s) found: col-108 / CE36738 [WormBase]
Description(s) found:
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  • WBGene00000682 locus:col-108 status:Partially_confirmed UniProt:Q95Y22 protein_id:CCD72810.1 [WormBase]
  • gi|71996902|ref|NP_500133.2| COLlagen family member (col-108) [Caenorhabditis elegans] [NCBI NR]
  • gi|48060128|gb|AAK68452.2|AC024775_2 Collagen protein 108 [Caenorhabditis elegans] [NCBI NR]
  • Collagen protein 108 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • CE36738 WBGene00000682 locus:col-108 status:Partially_confirmed TR:Q95Y22 protein_id:AAK68452.2 [wormpep150.fasta]
  • 36738 WBGene00000682 locus:col-108 status:Partially_confirmed TR:Q95Y22 protein_id:AAK68452.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE36738 WBGene00000682 locus:col-108 status:Partially_confirmed UniProt:Q95Y22_CAEEL protein_id:AAK68452.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE36738 WBGene00000682 locus:col-108 status:Partially_confirmed UniProt:Q95Y22_CAEEL protein_id:AAK68452.2| [wormORF-contam.fasta]
  • COLlagen family member (col-108) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE36738 WBGene00000682 locus:col-108 status:Partially_confirmed UniProt:Q95Y22 protein_id:AAK68452.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE36738 WBGene00000682 locus:col-108 status:Partially_confirmed UniProt:Q95Y22 protein_id:CCD72810.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • COLlagen OS=Caenorhabditis elegans GN=col-108 PE=4 SV=2 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 304 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: phosphate transport [IEALink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQRIKAY RFVAYSAVAF SVVAVISVSV TLPMVYNYVH HVKRSMQTEI NFCKGSAKDI  60
   61 WTEVNHLKSI PASRNRTARQ AGYDAGVNGG GSEASGAPGN CEACCLPGAA GPAGTPGKPG 120
  121 RPGKAGAPGL PGNPGRPPQQ PCEPITPPPC KPCPQGPAGP PGPPGPAGDA GSDGSPGAPG 180
  181 SDGQPGAAGD KGPAGPNGNP GAPGSPGKPG EDGKSEPITP GAPGPAGPPG PQGPPGAPGQ 240
  241 PGHDGQPGTP GPKGPNGNPG APGADGNPGT PGVAGVAGSG GEKGVCPKYC AIDGGVFFED 300
  301 GSRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..304] PSI-BLAST 26.30103 No description for 1y0fA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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