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View Structure Prediction Details

Protein: col-108
Organism: Caenorhabditis elegans
Length: 304 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-108.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
261.0 [0..45] [302..1396]

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Predicted Domain #1
Region A:
Residues: [1-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQRIKAY RFVAYSAVAF SVVAVISVSV TLPMVYNYVH HVKRSMQTEI NFCKGSAKDI  60
   61 WTEVNHLKSI PASRNRTARQ AGYDAGVNGG GSEASGAPGN CEACCLPGAA GPAGTPGKPG 120
  121 RPGKAGAPGL PGNPGRPPQQ PCEPITPPPC KPCPQGPAGP PGPPGPAGDA GSDGSPGAPG 180
  181 SDGQPGAAGD KGPAGPNGNP GAPGSPGKPG EDGKSEPITP GAPGPAGPPG PQGPPGAPGQ 240
  241 PGHDGQPGTP GPKGPNGNPG APGADGNPGT PGVAGVAGSG GEKGVCPKYC AIDGGVFFED 300
  301 GSRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 1y0fA
Description: No description for 1y0fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle