YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-108
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQRIKAY RFVAYSAVAF SVVAVISVSV TLPMVYNYVH HVKRSMQTEI NFCKGSAKDI  60
   61 WTEVNHLKSI PASRNRTARQ AGYDAGVNGG GSEASGAPGN CEACCLPGAA GPAGTPGKPG 120
  121 RPGKAGAPGL PGNPGRPPQQ PCEPITPPPC KPCPQGPAGP PGPPGPAGDA GSDGSPGAPG 180
  181 SDGQPGAAGD KGPAGPNGNP GAPGSPGKPG EDGKSEPITP GAPGPAGPPG PQGPPGAPGQ 240
  241 PGHDGQPGTP GPKGPNGNPG APGADGNPGT PGVAGVAGSG GEKGVCPKYC AIDGGVFFED 300
  301 GSRR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.85
Transmembrane Helix	12	36	0.85
Non-Cytoplasmic	37	304	0.92