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Protein Overview: nhr-109

General Information:
Name(s) found: nhr-109 / CE36324 [WormBase]
Description(s) found:
Found 13 descriptions.
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  • WBGene00003699 locus:nhr-109 status:Confirmed UniProt:Q7JP54 protein_id:CCD73611.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 318 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    steroid hormone receptor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFTLEQKLA DIRCMCRACR LTKCIEVGMN PVGVRQKPGS FRKSKELISP SSSNHDEFSR  60
   61 MPILSKMKLN YENMRNARKA LHNEVGENVF EEKIPKEINY KESVQQGMKD YTLMPEWVSS 120
  121 CFDEFRTLSA DQKNILFRNS YIPFFMMETA FLSHINNMPD SVIFPSGDYC DMKNLERYYN 180
  181 STNFEKKIST EDIENLFKPF YDNYKRSLLL PMMNLQVDIY EFLTLFTLLH WDTGLVEITD 240
  241 ECLEIGTKVK AEVFKELDFY LTNVKKVAEP SVRIGTIVNL LPAVHKSVRR IQDDMEMTKV 300
  301 FNIFSAPNEF FDLVTGNF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] PSI-BLAST 44.0 LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.15996699473685 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.46162010671465 bayes_pls_golite062009
  • protein binding
    		•  0.33427459029264 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.15459949087509 bayes_pls_golite062009
  • DNA binding
    		•  0.14395376162921 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle