| Protein: | nhr-109 |
| Organism: | Caenorhabditis elegans |
| Length: | 318 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-109.
| Description | E-value | Query Range |
Subject Range |
|
|
235.0 | [0..1] | [316..306] |
|
Region A: Residues: [1-318] |
1 11 21 31 41 51
| | | | | |
1 MVFTLEQKLA DIRCMCRACR LTKCIEVGMN PVGVRQKPGS FRKSKELISP SSSNHDEFSR 60
61 MPILSKMKLN YENMRNARKA LHNEVGENVF EEKIPKEINY KESVQQGMKD YTLMPEWVSS 120
121 CFDEFRTLSA DQKNILFRNS YIPFFMMETA FLSHINNMPD SVIFPSGDYC DMKNLERYYN 180
181 STNFEKKIST EDIENLFKPF YDNYKRSLLL PMMNLQVDIY EFLTLFTLLH WDTGLVEITD 240
241 ECLEIGTKVK AEVFKELDFY LTNVKKVAEP SVRIGTIVNL LPAVHKSVRR IQDDMEMTKV 300
301 FNIFSAPNEF FDLVTGNF
|
| Detection Method: |  |
| Confidence: | 44.0 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.15996699473685 | bayes_pls_golite062009 |
| transcription regulator activity | 0.46162010671465 | bayes_pls_golite062009 |
| protein binding | 0.33427459029264 | bayes_pls_golite062009 |
| nucleic acid binding | 0.15459949087509 | bayes_pls_golite062009 |
| DNA binding | 0.14395376162921 | bayes_pls_golite062009 |
