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Protein Overview: gi|25408800, gi|...

General Information:
Name(s) found: gi|25408800 [NCBI NR]
gi|20198076 [NCBI NR]
gi|15227950 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • pir||G84854 hypothetical protein At2g42510 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|20198076|gb|AAM15386.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15227950|ref|NP_181779.1| spliceosome protein-related [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 646 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: spliceosome assembly [IEA]
    nuclear mRNA splicing, via spliceosome [IEA]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRFDTGES IGSGKTSISR DEFAEDSLKI VSLPPVENDD SVEEMISPKK QVKSSPFTSV  60
   61 FEKDGEIIHS DSIDISFSET TLEETVAMNV ECPGVVVVSV PENGSTILEE NKVGEEIKES 120
  121 SEISTTEGDR LGDDVLKIKD VVETDGFVVS ISDMKESLNS EKKGQDSDGQ RIVEAEKIIL 180
  181 FAEIGDGSTF LEENKELQQI KEVSEISTES DQFGDDVYKI EDDCVGSISD MKEILNSQKK 240
  241 GQDSDVQILW ETEKKNDGDT LARASDIHKI EKNGNGSKDQ REKVERVRVK DNAFVGRSVN 300
  301 IDLVDDTALF DVVPFYKKGK DHSKRPVTAH TDKDAPRKHK KVGVEKPIDK GNASSIVERN 360
  361 ASTKVSDFRN SGEMNGKQLR IMYSRNQMES MRLLPELVTE YEGLKNHKSI LEDYVVKEEK 420
  421 TEDNDDYNSI LRPAFAVDGE PDFDSGPPED GIEYLRRVRH IWLSCFHHLR WEAKRIPNVK 480
  481 VAKVSGSKYR EKEQSVYMPQ IPRAPATGEG MGGLVAFRLL THSSGIPFFQ LAYLSVFLLT 540
  541 DKDTRNGLSD TGIKAEKADM FGEKESGLES SDCKWVVALC ASVDTPPDAD TSACLRALVR 600
  601 KCASLRALEV GVLEMNKLSL WQICSSPSQA DILAKWNERR SVFTTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..101] MSA 1.003976 View MSA. No confident structure predictions are available.
    2 View Details [102..319] deduced N/A No confident structure predictions are available.
    3 View Details [320..437] deduced N/A No confident structure predictions are available.
    4 View Details [438..646] Pfam 19.408935 No description for PF04938.3 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle