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View Structure Prediction Details

Protein: gi|25408800, gi|...
Organism: Arabidopsis thaliana
Length: 646 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25408800, gi|....

Description E-value Query
Range
Subject
Range
gi|18404909, gi|... - gi|18404909|ref|NP_564657.1| spliceosome protein-related [Arabidopsis thaliana], gi|14532738|gb|AAK6...
566.0 [0..126] [625..1]
GEMI2_MOUSE - Gem-associated protein 2 OS=Mus musculus GN=Gemin2 PE=2 SV=1
285.0 [0..422] [635..8]
gi|156717376, gi... - gi|156717376|ref|NP_001096228.1| hypothetical protein LOC100124782 [Xenopus (Silurana) tropicalis], ...
277.0 [0..422] [634..3]
gi|114652754 - gi|114652754|ref|XP_001146136.1| PREDICTED: SMN-interacting protein 1 isoform 4 [Pan troglodytes]
gi|119586232, gi... - gi|9650993|dbj|BAB03508.1| SMN interacting protein1-beta [Homo sapiens], gi|57165350|ref|NP_00100918...
274.0 [0..422] [635..19]
gi|109083415 - gi|109083415|ref|XP_001092592.1| PREDICTED: similar to SMN-interacting protein 1 isoform beta isofor...
274.0 [0..422] [635..8]
gi|114652752 - gi|114652752|ref|XP_001146059.1| PREDICTED: SMN-interacting protein 1 isoform 3 [Pan troglodytes]
gi|119586234 - gi|119586234|gb|EAW65830.1| survival of motor neuron protein interacting protein 1, isoform CRA_f [H...
270.0 [0..422] [635..19]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRFDTGES IGSGKTSISR DEFAEDSLKI VSLPPVENDD SVEEMISPKK QVKSSPFTSV  60
   61 FEKDGEIIHS DSIDISFSET TLEETVAMNV ECPGVVVVSV P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENGSTILEEN KVGEEIKESS EISTTEGDRL GDDVLKIKDV VETDGFVVSI SDMKESLNSE  60
   61 KKGQDSDGQR IVEAEKIILF AEIGDGSTFL EENKELQQIK EVSEISTESD QFGDDVYKIE 120
  121 DDCVGSISDM KEILNSQKKG QDSDVQILWE TEKKNDGDTL ARASDIHKIE KNGNGSKDQR 180
  181 EKVERVRVKD NAFVGRSVNI DLVDDTALFD VVPFYKKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [320-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDHSKRPVTA HTDKDAPRKH KKVGVEKPID KGNASSIVER NASTKVSDFR NSGEMNGKQL  60
   61 RIMYSRNQME SMRLLPELVT EYEGLKNHKS ILEDYVVKEE KTEDNDDYNS ILRPAFAV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [438-646]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGEPDFDSGP PEDGIEYLRR VRHIWLSCFH HLRWEAKRIP NVKVAKVSGS KYREKEQSVY  60
   61 MPQIPRAPAT GEGMGGLVAF RLLTHSSGIP FFQLAYLSVF LLTDKDTRNG LSDTGIKAEK 120
  121 ADMFGEKESG LESSDCKWVV ALCASVDTPP DADTSACLRA LVRKCASLRA LEVGVLEMNK 180
  181 LSLWQICSSP SQADILAKWN ERRSVFTTV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 19.408935
Match: PF04938.3
Description: No description for PF04938.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle