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Protein Overview: CLSY1_ARATH

General Information:
Name(s) found: CLSY1_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • SNF2 domain-containing protein CLASSY 1 OS=Arabidopsis thaliana GN=CLSY1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1256 amino acids

    Gene Ontology:
    Cellular Component: nucleolus [IDA]
    Biological Process: gene silencing by RNA [IMP]
    Molecular Function: nucleic acid binding [IEA]
    DNA binding [IEA][ISS]
    ATP binding [IEA][ISS]
    helicase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR  60
   61 IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR VLSIERKPHE SECLCTFHVS 120
  121 VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN 180
  181 LGKFLPDLTW LLVTSVLKNI VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV 240
  241 MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM 300
  301 PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK 360
  361 TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN SLCGGVSGNL MDEIDKYRSK 420
  421 AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR 480
  481 TLSAGAYNKL IDSYMSRIDS TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG 540
  541 ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH 600
  601 VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES 660
  661 DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP SSDKIGGCVV SHTPGAGKTF 720
  721 LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI 780
  781 QFEGIPKPSQ DVMHVLDCLD KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR 840
  841 ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV 900
  901 HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS 960
  961 GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL QNIMSTYHGY PLELELLITL1020
 1021 AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH1080
 1081 NIAPIRLFLE LFENVFRWKR GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC1140
 1141 AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT1200
 1201 WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] deduced N/A No confident structure predictions are available.
    2 View Details [86..388] PSI-BLAST 7.0 Heavy meromyosin subfragment
    3 View Details [389..540] deduced N/A No confident structure predictions are available.
    4 View Details [541..642] deduced N/A No confident structure predictions are available.
    5 View Details [643..1256] PSI-BLAST 73.0 Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle