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Protein Overview: PUB28_ARATH

General Information:
Name(s) found: PUB28_ARATH [Swiss-Prot]
Description(s) found:
Found 18 descriptions.
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  • U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 409 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: response to chitin [IEP]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSDDLYITT VPCFFKCPIS LDVMKSPVSL STGVTYDRVS IQRWLDDGNN TCPATMQILQ  60
   61 NKEFVPNLTL HRLIDHWSDS INRRADSESP ESDTPTRDEI NAAIERFRIE NDARSKILRF 120
  121 ARESDENREF LAGKDDFVAM LVDLISDSRN FSDSQLLLVG EAVKILSMIR RKIFDRRRLS 180
  181 NLILTNGGDC LTSFFLLIKR GNPKLKIDCS AVLEFIAVDA ESKLIIAKGE GLVTEIIKLI 240
  241 SSDSDSSLIE ANLSLLIAIA SSKRVKLALI REKLVTKLTS LLTDPTTSVS VTEKCLKLLE 300
  301 AISSCKEGRS EICDGVCVET VVNKLMKVST AATEHAVTVL WSVCYLFKEK KAQDAVIRIN 360
  361 GVTKILLLLQ SNCSLTVRHM LTDLLKVFKV NSRSCLSVYE TKTTHIMPF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..134] PSI-BLAST 12.69897 NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana
    2 View Details [135..409] PSI-BLAST 30.69897 Karyopherin alpha

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle