| Protein: | PUB28_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 409 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB28_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
163.0 | [0..8] | [408..233] |
|
Region A: Residues: [1-134] |
1 11 21 31 41 51
| | | | | |
1 MRSDDLYITT VPCFFKCPIS LDVMKSPVSL STGVTYDRVS IQRWLDDGNN TCPATMQILQ 60
61 NKEFVPNLTL HRLIDHWSDS INRRADSESP ESDTPTRDEI NAAIERFRIE NDARSKILRF 120
121 ARESDENREF LAGK
|
| Detection Method: |  |
| Confidence: | 12.69897 |
| Match: | 1t1hA |
| Description: | NMR solution structure of the U box domain from AtPUB14, an armadillo repeat containing protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [135-409] |
1 11 21 31 41 51
| | | | | |
1 DDFVAMLVDL ISDSRNFSDS QLLLVGEAVK ILSMIRRKIF DRRRLSNLIL TNGGDCLTSF 60
61 FLLIKRGNPK LKIDCSAVLE FIAVDAESKL IIAKGEGLVT EIIKLISSDS DSSLIEANLS 120
121 LLIAIASSKR VKLALIREKL VTKLTSLLTD PTTSVSVTEK CLKLLEAISS CKEGRSEICD 180
181 GVCVETVVNK LMKVSTAATE HAVTVLWSVC YLFKEKKAQD AVIRINGVTK ILLLLQSNCS 240
241 LTVRHMLTDL LKVFKVNSRS CLSVYETKTT HIMPF
|
| Detection Method: | |
| Confidence: | 30.69897 |
| Match: | 1ee4A |
| Description: | Karyopherin alpha |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
