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Protein Overview: gi|39545882, gi|...

General Information:
Name(s) found: gi|6735316 [NCBI NR]
gi|39545882 [NCBI NR]
gi|15230282 [NCBI NR]
gi|11357706 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|6735316|emb|CAB68143.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|39545882|gb|AAR28004.1| TFIIB4 [Arabidopsis thaliana] [NCBI NR]
  • gi|15230282|ref|NP_191296.1| transcription factor IIB (TFIIB) family protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T45815 hypothetical protein F28O9.220 - Arabidopsis thaliana [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 360 amino acids

    Gene Ontology:
    Cellular Component: transcription factor complex [IEA]
    nucleus [IEA]
    Biological Process: regulation of transcription, DNA-dependent [IEA]
    transcription initiation [IEA]
    translational initiation [IEA]
    Molecular Function: translation initiation factor activity [IEA]
    zinc ion binding [IEA]
    protein binding [IEA]
    RNA polymerase II transcription factor activity [ISS]
    transcription regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMKWGHSCR RCKQINVVTD HVTRRTRCFG CGLEFKYRPI GDLSPVAEND TVRLPDPTNT  60
   61 LLSNTDLSIV TTEHKNGSFD DSLSLNLGNS SKPRLDPVSI ATAKLMNGSS NDFLSLGTSQ 120
  121 NSETITASSD EFLFSDLGHL QKFSFDPLSM ASTKPNKALS IVSIEAISNG LKLPATIKGQ 180
  181 ANEIFKVVES YARGKERNVL FAACIYIACR DNDMTRTMRE ISRFANKASI SDISETVGFI 240
  241 AEKLEINKNW YMSIETANFI KRFCSIFRLD KEAVEAALEA AESYDYMTNG RRAPVSVAAG 300
  301 IVYVIARLSY EKHLLKGLIE ATGVAENTIK GTYGDLYPNL PTIVPTWFAN ANDLKNLGAP 360
  361

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] MSA 5.099993 View MSA. No confident structure predictions are available.
    2 View Details [66..148] deduced N/A No confident structure predictions are available.
    3 View Details [149..360] PSI-BLAST 36.39794 Transcription factor IIB (TFIIB), core domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle