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Protein Overview: gi|9755836, gi|1...

General Information:
Name(s) found: gi|9755836 [NCBI NR]
gi|63003814 [NCBI NR]
gi|15237311 [NCBI NR]
gi|11358175 [NCBI NR]
gi|110738266 [NCBI NR]
Description(s) found:
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  • gi|9755836|emb|CAC01867.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|63003814|gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] [NCBI NR]
  • gi|15237311|ref|NP_197130.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T51496 hypothetical protein T21H19_180 - Arabidopsis thaliana [NCBI NR]
  • gi|110738266|dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9LF02) Hypothetical protein [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|11358175|pir||T51496 hypothetical protein T21H19_180 - Arabidopsis thalianagi|15237311|ref|NP_197130.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA recognition motif (RRM)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA recognition motif (RRM)-containing protein | chr5:5311366-5315499 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g16260 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:5311363-5315496 FORWARD LENGTH=519 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g16260 OS=Arabidopsis thaliana GN=T21H19_180 PE=2 SV=1 [ARATH-contam.fasta]
  • At5g16260 OS=Arabidopsis thaliana GN=T21H19_180 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 519 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [IMP]
    negative regulation of flower development [IMP]
    Molecular Function: RNA binding [ISS]
    mRNA binding [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSDNLQLP PSSTGATVAA TDVGWYILGE NQQNLGPYTF SELCNHFRNG YLLETTLVWA  60
   61 DGRSEWQPLS AIPDLMSRIS GAEIAYPAVG SSGLINGSNA GTRQEKQDYT ASASTEDEFE 120
  121 KWQREIKDAE AEAERLKNGS VSGTELVEDD HERASSPPEG EDEFTDDDGT KYKWDRARRV 180
  181 WVPQDDPPLG SVDPYGLEEM TFAKEDEVFP TINILDTSVD KKDASKDDVA GKKEEDGSDE 240
  241 TAEINSNGKR KLPEPETEKK EPNKPPDSWF ELKVNPHIYV NGLPDDVTIE EVAEVFSKCG 300
  301 IIKEDDTGKP RIKLYSDKAT GKLKGDALIS YMKEPSVDLA IKILDGAPLR PADKLLMSVS 360
  361 RAKFEQKGER FITKQTDNKK KKKLKKVEQK LLGWGGTDDS KVSIPATVVL RYMFSPAELM 420
  421 ADEDLVAELE EDVKEESLKH GPFDSVKVCE HHPQGVVLVR FKDRRDAQKC IEAMNGRWYA 480
  481 KRQIHASLDD GSVNHATVRD FDLEAERLDQ FAAELEAAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] FFAS03 2.79 Solution structure of the GYF domain of a hypothetical protein from Arabidopsis thaliana
    2 View Details [79..159] deduced N/A No confident structure predictions are available.
    3 View Details [160..519] PSI-BLAST 12.0 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.45707535254245 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
  • U1 snRNA binding
    		•  3.02511982045347 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • protein binding
    		•  0.42571879933058 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle