| Protein: | gi|9755836, gi|1... |
| Organism: | Arabidopsis thaliana |
| Length: | 519 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9755836, gi|1....
| Description | E-value | Query Range |
Subject Range |
|
|
240.0 | [0..112] | [518..51] |
|
Region A: Residues: [1-78] |
1 11 21 31 41 51
| | | | | |
1 MSDSDNLQLP PSSTGATVAA TDVGWYILGE NQQNLGPYTF SELCNHFRNG YLLETTLVWA 60
61 DGRSEWQPLS AIPDLMSR
|
| Detection Method: |  |
| Confidence: | 2.79 |
| Match: | 1wh2A |
| Description: | Solution structure of the GYF domain of a hypothetical protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.45707535254245 | bayes_pls_golite062009 |
|
Region A: Residues: [79-159] |
1 11 21 31 41 51
| | | | | |
1 ISGAEIAYPA VGSSGLINGS NAGTRQEKQD YTASASTEDE FEKWQREIKD AEAEAERLKN 60
61 GSVSGTELVE DDHERASSPP E
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [160-519] |
1 11 21 31 41 51
| | | | | |
1 GEDEFTDDDG TKYKWDRARR VWVPQDDPPL GSVDPYGLEE MTFAKEDEVF PTINILDTSV 60
61 DKKDASKDDV AGKKEEDGSD ETAEINSNGK RKLPEPETEK KEPNKPPDSW FELKVNPHIY 120
121 VNGLPDDVTI EEVAEVFSKC GIIKEDDTGK PRIKLYSDKA TGKLKGDALI SYMKEPSVDL 180
181 AIKILDGAPL RPADKLLMSV SRAKFEQKGE RFITKQTDNK KKKKLKKVEQ KLLGWGGTDD 240
241 SKVSIPATVV LRYMFSPAEL MADEDLVAEL EEDVKEESLK HGPFDSVKVC EHHPQGVVLV 300
301 RFKDRRDAQK CIEAMNGRWY AKRQIHASLD DGSVNHATVR DFDLEAERLD QFAAELEAAE 360
361
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 2ghpA |
| Description: | No description for 2ghpA was found. |
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| nucleic acid binding | 3.81920018903278 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| binding | 3.05116833253954 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
| transcription regulator activity | 1.07788694919471 | bayes_pls_golite062009 |
| DNA binding | 0.978604858165557 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
| protein binding | 0.42571879933058 | bayes_pls_golite062009 |
| transcription factor activity | 0.234742017105535 | bayes_pls_golite062009 |
