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Protein Overview: PMK_ARATH

General Information:
Name(s) found: PMK_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|62320938|dbj|BAD93949.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51971975|dbj|BAD44652.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • pir||C86443 unknown protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15222502|ref|NP_174473.1| GHMP kinase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12321295|gb|AAG50716.1|AC079041_9 unknown protein [Arabidopsis thaliana] [NCBI NR]
  • Phosphomevalonate kinase OS=Arabidopsis thaliana GN=PMK PE=1 SV=1 [Swiss-Prot]
  • (Q9C6T1) Hypothetical protein [athaliana3702.FASTAC.txt]
  • hypothetical protein [Arabidopsis thaliana]gi|12321295|gb|AAG50716.1| unknown protein [Arabidopsis thaliana]gi|25353248|pir||C86443 unknown protein [imported] - Arabidopsis thalianagi|15222502|ref|NP_174473.1| GHMP kinase family protein [Arabidopsis th [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 GHMP kinase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | GHMP kinase family protein | chr1:11459030-11461629 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / kinase/ phosphomevalonate kinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | GHMP kinase family protein | chr1:11459050-11461649 FORWARD LENGTH=505 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Phosphomevalonate kinase OS=Arabidopsis thaliana GN=F5M6.9 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 505 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: phosphorylation [IEA]
    Molecular Function: ATP binding [IEA]
    kinase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVASAPGK VLMTGGYLVL EKPNAGLVLS TNARFYAIVK PINEEVKPES WAWKWTDVKL  60
   61 TSPQLSRESM YKLSLNHLTL QSVSASDSRN PFVEHAIQYA IAAAHLATEK DKESLHKLLL 120
  121 QGLDITILGS NDFYSYRNQI ESAGLPLTPE SLGTLAPFAS ITFNAAESNG ANSKPEVAKT 180
  181 GLGSSAAMTT AVVAALLHYL GVVDLSDPCK EGKFGCSDLD VIHMIAQTSH CLAQGKVGSG 240
  241 FDVSCAVYGS QRYVRFSPEV LSFAQVAVTG LPLNEVIGTI LKGKWDNKRT EFSLPPLMNL 300
  301 FLGEPGSGGS STPSMVGAVK KWQMSDPEKA RENWQNLSDA NLELETKLND LSKLAKDHWD 360
  361 VYLRVIKSCS VLTSEKWVLH ATEPINEAII KELLEAREAM LRIRILMRQM GEAASVPIEP 420
  421 ESQTQLLDST MSAEGVLLAG VPGAGGFDAI FAITLGDSGT KLTQAWSSHN VLALLVREDP 480
  481 HGVCLESGDP RTTCITSGVS SIHLE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..505] PSI-BLAST 43.39794 Mevalonate kinase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • diphosphomevalonate decarboxylase activity
    		•  2.34245588421319 bayes_pls_golite062009
  • catalytic activity
    		•  0.836142537655721 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  0.49664490095304 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.369771518688522 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.325699575011026 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.212099606954236 bayes_pls_golite062009
  • structural molecule activity
    		•  2.19428886088058E-4 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.75

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle