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Protein Overview: PUB20_ARATH

General Information:
Name(s) found: PUB20_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
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  • U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 431 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    Biological Process: response to chitin [IEP]
    Molecular Function: ubiquitin-protein ligase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR  60
   61 ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC GSSLGGGIER IPTPRVPVTS 120
  121 HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS 180
  181 ENANASLLLE ETVSVLTWML PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL 240
  241 NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE 300
  301 MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV 360
  361 CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL LKMMNKVMKM NGFVDRSYSS 420
  421 SIEFKHVKKP F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..431] PSI-BLAST 44.30103 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle