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Protein Overview: ZHD1_ARATH

General Information:
Name(s) found: ZHD1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759621|dbj|BAB11563.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|73921140|sp|Q9FKP8.1|Y5541_ARATH RecName: Full=ZF-HD homeobox protein At5g65410 [NCBI NR]
  • gi|30023758|gb|AAP13412.1| At5g65410 [Arabidopsis thaliana] [NCBI NR]
  • gi|27311559|gb|AAO00745.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15238445|ref|NP_201344.1| HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator [Arabidopsis thaliana] [NCBI NR]
  • Zinc-finger homeodomain protein 1 OS=Arabidopsis thaliana GN=ZHD1 PE=1 SV=1 [Swiss-Prot]
  • ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1 [Swiss-Prot]
  • (Q9FKP8) Similarity to unknown protein (Hypothetical protein) (At5g65410) [athaliana3702.FASTAC.txt]
  • At5g65410 [Arabidopsis thaliana]gi|9759621|dbj|BAB11563.1| unnamed protein product [Arabidopsis thaliana]gi|27311559|gb|AAO00745.1| putative protein [Arabidopsis thaliana]gi|15238445|ref|NP_201344.1| zinc finger homeobox family protein / ZF-HD homeobox [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 ZF-HD homeobox protein At5g65410 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATHB25, ZFHD2 | ATHB25/ZFHD2 (ZINC FINGER HOMEODOMAIN 2); transcription factor | chr5:26153405-26154244 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ZF-HD homeobox protein At5g65410 [nr-271106-contam.fasta]
  • At5g65410 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATHB25, ZFHD2, HB25, ZHD1 | homeobox protein 25 | chr5:26136179-26137018 FORWARD LENGTH=279 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 279 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: regulation of transcription, DNA-dependent [IEA]
    regulation of transcription [IEA]
    Molecular Function: DNA binding [IEA]
    transcription factor activity [IEA][ISS]
    transcription regulator activity [IEA]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFEDNNNNN DEEQEEDMNL HEEEEDDDAV YDSPPLSRVL PKASTESHET TGTTSTGGGG  60
   61 GFMVVHGGGG SRFRFRECLK NQAVNIGGHA VDGCGEFMPA GIEGTIDALK CAACGCHRNF 120
  121 HRKELPYFHH APPQHQPPPP PPGFYRLPAP VSYRPPPSQA PPLQLALPPP QRERSEDPME 180
  181 TSSAEAGGGI RKRHRTKFTA EQKERMLALA ERIGWRIQRQ DDEVIQRFCQ ETGVPRQVLK 240
  241 VWLHNNKHTL GKSPSPLHHH QAPPPPPPQS SFHHEQDQP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..188] Pfam 37.443697 No description for PF04770.3 was found. No confident structure predictions are available.
    2 View Details [189..279] PSI-BLAST 11.69897 Solution structure of homeobox domain of Arabidopsis thaliana hypothetical protein F22K18.140

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.334577365229545 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0696342306231097 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle