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Protein Overview: EXOS5_ARATH

General Information:
Name(s) found: EXOS5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79314448|ref|NP_001030819.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|79314427|ref|NP_001030818.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|79314404|ref|NP_001030817.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana] [NCBI NR]
  • gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana] [NCBI NR]
  • gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana] [NCBI NR]
  • gi|15231368|ref|NP_190207.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|145332769|ref|NP_001078250.1| 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] [NCBI NR]
  • pir||T49262 hypothetical protein F12M12.180 - Arabidopsis thaliana [NCBI NR]
  • gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana GN=RRP46 PE=2 SV=1 [Swiss-Prot]
  • (Q9LX74) Hypothetical protein (At3g46210) [athaliana3702.FASTAC.txt]
  • putative protein [Arabidopsis thaliana]gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]gi|11357383|pir||T49262 hypothetical protein F12M12.180 - Arabidopsis thalianagi|15231368|ref|NP_190207.1| 3' exoribonuclease family domain 1-containing p [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 3' exoribonuclease family domain 1-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 3' exoribonuclease family domain 1-containing protein | chr3:16987945-16989474 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g46210 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:16976960-16978489 REVERSE LENGTH=239 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AT3G46210 protein OS=Arabidopsis thaliana GN=F12M12_180 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA processing [IEA][ISS]
    Molecular Function: 3'-5'-exoribonuclease activity [IEA][ISS]
    RNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDREDGRT PNQLRPLACS RNILHRPHGS ASWSQGDTKV LAAVYGPKAG TKKNENAEKA  60
   61 CFEVIWKPKS GQIGKVEKEY EMILKRTIQS ICVLTVNPNT TTSVIIQVVH DDGSLLPCAI 120
  121 NAACAALVDA GIPMKHLAVA ICCCLAENGY LVLDPNKLEE KKMTAFAYLV FPNTTLSVLP 180
  181 EGSSVAEGEP VEHGIITSIT HGVMSVDDYF LCVENGRAAT ASLSAFFRKN FQQSSSKAG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] PSI-BLAST 36.30103 No description for 2nn6D was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • 3'-5'-exoribonuclease activity
    		•  6.46930372693262 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  6.29937266123635 bayes_pls_golite062009
  • exoribonuclease activity
    		•  6.25059972010432 bayes_pls_golite062009
  • ribonuclease activity
    		•  4.90722443274963 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  4.29895100594643 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  3.83939403332553 bayes_pls_golite062009
  • exonuclease activity
    		•  3.40686901061667 bayes_pls_golite062009
  • RNA binding
    		•  2.05527376734941 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.90115575554186 bayes_pls_golite062009
  • structural molecule activity
    		•  1.69321127364043 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.48690085154298 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.20748032530392 bayes_pls_golite062009
  • mRNA binding
    		•  1.17402119891853 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.05662964529454 bayes_pls_golite062009
  • binding
    		•  0.907487229190259 bayes_pls_golite062009
  • catalytic activity
    		•  0.878454819018611 bayes_pls_golite062009
  • DNA binding
    		•  0.828609700556836 bayes_pls_golite062009
  • nuclease activity
    		•  0.69721312877891 bayes_pls_golite062009
  • tRNA-specific ribonuclease activity
    		•  0.383567539949931 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle