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Protein Overview: SGT1B_ARATH

General Information:
Name(s) found: SGT1B_ARATH [Swiss-Prot]
Description(s) found:
Found 24 descriptions.
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  • Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 358 amino acids

    Gene Ontology:
    Cellular Component: SCF ubiquitin ligase complex [TAS]
    Biological Process: protein catabolic process [IMP]
    defense response to fungus [IMP]
    jasmonic acid mediated signaling pathway [IMP]
    auxin mediated signaling pathway [IMP]
    ubiquitin-dependent protein catabolic process [IMP]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKELAEKAK EAFLDDDFDV AVDLYSKAID LDPNCAAFFA DRAQANIKID NFTEAVVDAN  60
   61 KAIELEPTLA KAYLRKGTAC MKLEEYSTAK AALEKGASVA PNEPKFKKMI DECDLRIAEE 120
  121 EKDLVQPMPP SLPSSSTTPL ATEADAPPVP IPAAPAKPMF RHEFYQKPEE AVVTIFAKKV 180
  181 PKENVTVEFG EQILSVVIDV AGEEAYHLQP RLFGKIIPEK CRFEVLSTKV EIRLAKAEII 240
  241 TWASLEYGKG QSVLPKPNVS SALSQRPVYP SSKPAKDWDK LEAEVKKQEK DEKLDGDAAM 300
  301 NKFFSDIYSS ADEDMRRAMN KSFAESNGTV LSTNWKEVGT KKVESTPPDG MELKKWEY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..358] PSI-BLAST 46.522879 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  2.40798956799643 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  2.35683872990179 bayes_pls_golite062009
  • binding
    		•  2.14253214573541 bayes_pls_golite062009
  • protein binding
    		•  1.65083457326273 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.907004002487622 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.820063686537832 bayes_pls_golite062009
  • ligase activity
    		•  0.812268484883773 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle