Protein Overview: GPDL6_ARATH

General Information:
Name(s) found:	GPDL6_ARATH [Swiss-Prot]
Description(s) found: Found 14 descriptions. SHOW ALL	Glycerophosphodiester phosphodiesterase GDPDL6 OS=Arabidopsis thaliana GN=GDPDL6 PE=2 SV=1 [Swiss-Prot]
Organism:	Arabidopsis thaliana
Length:	753 amino acids
Gene Ontology:
Cellular Component:	anchored to membrane [TAS]
Biological Process:	glycerol metabolic process [IEA][ISS] lipid metabolic process [IEA]
Molecular Function:	glycerophosphodiester phosphodiesterase activity [ISS] kinase activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA  60
   61 NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI SSVFPKAQKT YKVNGQDLKG 120
  121 WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME 180
  181 HKLSPAEYLR SLRFRGINVI SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY 240
  241 SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR 300
  301 TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH 360
  361 NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC HDAADLSAST TARTTFMSRA 420
  421 TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG 480
  481 KAKAVTGVLI NIQNAAYLAS KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF 540
  541 EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH 600
  601 KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD 660
  661 LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD VIDPPLPPVA KLASNGTEGG 720
  721 PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..334]	FFAS03	7.43	Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
2	View Details	[335..662]	PSI-BLAST	62.0	Crystal structure of periplasmic glycerophosphodiester phosphodiesterase from Escherichia coli
3	View Details	[663..753]	deduced	N/A	No confident structure predictions are available.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
glycerophosphodiester phosphodiesterase activity	3.68445321741946	bayes_pls_golite062009
phosphoric diester hydrolase activity	2.87623941757347	bayes_pls_golite062009
phospholipase activity	2.34256284862049	bayes_pls_golite062009
phosphoric ester hydrolase activity	2.16637986205099	bayes_pls_golite062009
phospholipase C activity	1.73529903991246	bayes_pls_golite062009
catalytic activity	1.51309614844421	bayes_pls_golite062009
hydrolase activity	1.11363086413582	bayes_pls_golite062009
inositol or phosphatidylinositol phosphodiesterase activity	1.0337343980667	bayes_pls_golite062009
phosphoinositide phospholipase C activity	1.0337343980667	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.708240790319993	bayes_pls_golite062009
lipase activity	0.523560911441767	bayes_pls_golite062009

2

Term	Confidence	Notes
glycerophosphodiester phosphodiesterase activity	4.35763630438153	bayes_pls_golite062009
phosphoric diester hydrolase activity	3.47412784753044	bayes_pls_golite062009
phospholipase activity	2.8321699398643	bayes_pls_golite062009
phosphoric ester hydrolase activity	2.57532322042891	bayes_pls_golite062009
phospholipase C activity	2.32904713147591	bayes_pls_golite062009
inositol or phosphatidylinositol phosphodiesterase activity	1.61821062008614	bayes_pls_golite062009
phosphoinositide phospholipase C activity	1.61821062008614	bayes_pls_golite062009
catalytic activity	1.5937209337624	bayes_pls_golite062009
hydrolase activity	1.29995031555289	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.04192252786893	bayes_pls_golite062009
lipase activity	0.9683458467556	bayes_pls_golite062009

3

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

[View Details]

Source: Reynolds et al. 2008. Manuscript submitted

Philius confidence legend

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