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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPDL6_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFFILFSL FLHSSVAAPK TPAAAAAVPA KKWLTLNGQE PAVVARGGFS GLFPESSISA  60
   61 NDLAIGTSSP GFTMLCNLQM TKDGVGLCLS DIRLDNATTI SSVFPKAQKT YKVNGQDLKG 120
  121 WFVIDYDADT IFNKVTLVQN IFSRPSIFDG QMSVSAVEDV LGTKPPKFWL SVQYDAFYME 180
  181 HKLSPAEYLR SLRFRGINVI SSPEIGFLKS IGMDAGRAKT KLIFEFKDPE AVEPTTNKKY 240
  241 SEIQQNLAAI KAFASGVLVP KDYIWPIDSA KYLKPATTFV ADAHKAGLEV YASGFANDLR 300
  301 TSFNYSYDPS AEYLQFVDNG QFSVDGVITD FPPTASQSIT CFSHQNGNLP KAGHALVITH 360
  361 NGASGDYPGC TDLAYQKAID DGADIIDCSV QMSKDGIAFC HDAADLSAST TARTTFMSRA 420
  421 TSVPEIQPTN GIFSFDLTWA EIQSVKPQIE NPFTATGFQR NPANKNAGKF TTLADFLELG 480
  481 KAKAVTGVLI NIQNAAYLAS KKGLGVVDVV KSALTNSTLD KQSTQKVLIQ SDDSSVLSSF 540
  541 EAVPPYTRVL SIDKEIGDAP KTSIEEIKKH ADAVNLLRTS LITVSQSFAT GKTNVVEEMH 600
  601 KANISVYVSV LRNEYIAIAF DYFSDPTIEL ATFIAGRGVD GVITEFPATA TRYLRSPCSD 660
  661 LNKDQPYAIL PADAGALLTV ADKEAQLPAI PPNPPLDAKD VIDPPLPPVA KLASNGTEGG 720
  721 PPQTPPRSGT VAIAANLSLS LLAMMALGLL YTA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle