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Protein Overview: CPD_ARATH

General Information:
Name(s) found: CPD_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||T05030 cyclic phosphodiesterase (EC 3.1.4.-) - Arabidopsis thaliana [NCBI NR]
  • gi|7268687|emb|CAB78895.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|51315738|sp|O04147.1|CPD_ARATH RecName: Full=Cyclic phosphodiesterase; Short=CPDase [NCBI NR]
  • gi|2832621|emb|CAA16750.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|2065013|emb|CAA72363.1| cyclic phosphodiesterase [Arabidopsis thaliana] [NCBI NR]
  • gi|20148603|gb|AAM10192.1| protein kinase-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|17065492|gb|AAL32900.1| protein kinase - like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15234068|ref|NP_193628.1| cyclic phosphodiesterase [Arabidopsis thaliana] [NCBI NR]
  • Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1 SV=1 [Swiss-Prot]
  • (O04147) Cyclic phosphodiesterase (Protein kinase-like protein) [athaliana3702.FASTAC.txt]
  • Cyclic phosphodiesterase (CPDase)gi|7268687|emb|CAB78895.1| putative protein [Arabidopsis thaliana]gi|2065013|emb|CAA72363.1| cyclic phosphodiesterase [Arabidopsis thaliana]gi|2832621|emb|CAA16750.1| putative protein [Arabidopsis thaliana]gi|20148603| [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Cyclic phosphodiesterase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | cyclic phosphodiesterase | chr4:10370808-10371896 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • protein kinase-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cyclic-nucleotide phosphodiesterase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • protein kinase - like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • cyclic phosphodiesterase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Cyclic phosphodiesterase (CPDase) [nr-271106-contam.fasta]
  • | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr4:10370797-10371885 FORWARD LENGTH=181 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 181 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation [TAS]
    Molecular Function: cyclic-nucleotide phosphodiesterase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVKKDVYS VWALPDEESE PRFKKLMEAL RSEFTGPRFV PHVTVAVSAY LTADEAKKMF  60
   61 ESACDGLKAY TATVDRVSTG TFFFQCVFLL LQTTPEVMEA GEHCKNHFNC STTTPYMPHL 120
  121 SLLYAELTEE EKKNAQEKAY TLDSSLDGLS FRLNRLALCK TDTEDKTLET WETVAVCNLN 180
  181 P

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] PSI-BLAST 84.09691 tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.372436499192166 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle