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View Structure Prediction Details

Protein: CPD_ARATH
Organism: Arabidopsis thaliana
Length: 181 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPD_ARATH.

Description E-value Query
Range
Subject
Range
gi|18655431, gi|... - gi|18655431|pdb|1JH7|A Chain A, Semi-Reduced Inhibitor-Bound Cyclic Nucleotide Phosphodiesterase Fro...
307.0 [0..1] [181..1]

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Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVKKDVYS VWALPDEESE PRFKKLMEAL RSEFTGPRFV PHVTVAVSAY LTADEAKKMF  60
   61 ESACDGLKAY TATVDRVSTG TFFFQCVFLL LQTTPEVMEA GEHCKNHFNC STTTPYMPHL 120
  121 SLLYAELTEE EKKNAQEKAY TLDSSLDGLS FRLNRLALCK TDTEDKTLET WETVAVCNLN 180
  181 P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.09691
Match: 1fsiA
Description: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.372436499192166 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle