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Protein Overview: CLPP5_ARATH

General Information:
Name(s) found: CLPP5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9972387|gb|AAG10637.1|AC022521_15 ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana] [NCBI NR]
  • gi|89274139|gb|ABD65590.1| At1g02560 [Arabidopsis thaliana] [NCBI NR]
  • gi|75313059|sp|Q9S834.1|CLPP5_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit 5, chloroplastic; AltName: Full=Endopeptidase ClpP5; Short=nClpP5; AltName: Full=nClpP1; Flags: Precursor [NCBI NR]
  • gi|5360579|dbj|BAA82065.1| nClpP1 [Arabidopsis thaliana] [NCBI NR]
  • gi|4887543|emb|CAB43488.1| ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana] [NCBI NR]
  • pir||T52455 ATP-dependent clp proteinase (EC 3.4.21.-) chain P1 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|21536639|gb|AAM60971.1| ATP-dependent Clp protease proteolytic subunit ClpP5 [Arabidopsis thaliana] [NCBI NR]
  • gi|18378982|ref|NP_563657.1| CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase [Arabidopsis thaliana] [NCBI NR]
  • ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1 [Swiss-Prot]
  • (Q9S834) ATP-dependent Clp protease subunit ClpP (EC 3.4.21.92) (ATP-dependent Clp protease proteolytic subunit ClpP5) (Endopeptidase Clp) [athaliana3702.FASTAC.txt]
  • nClpP1 [Arabidopsis thaliana]gi|21536639|gb|AAM60971.1| ATP-dependent Clp protease proteolytic subunit ClpP5 [Arabidopsis thaliana]gi|4887543|emb|CAB43488.1| ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana]gi|25453517|pir||T52455 ATP-depe [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 ATP-dependent Clp protease proteolytic subunit (ClpP1) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: NCLPP1, NCLPP5, CLPP5 | CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1); endopeptidase Clp | chr1:538000-539805 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATP-dependent Clp protease subunit ClpP [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • nClpP1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1); endopeptidase Clp [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At1g02560 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP-dependent Clp protease proteolytic subunit ClpP5 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded CLP protease 5 | chr1:538000-539805 FORWARD LENGTH=298 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    chloroplast thylakoid [IDA]
    chloroplast envelope [IDA]
    chloroplastic endopeptidase Clp complex [IDA]
    plastid stroma [IDA]
    thylakoid [IDA]
    Biological Process: NONE FOUND
    Molecular Function: serine-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHACVSTSA SSLRFTAGFV SASPNGSSFD SPKLSLPFEP LRSRKTNKLV SDRKNWKNST  60
   61 PKAVYSGNLW TPEIPSPQGV WSIRDDLQVP SSPYFPAYAQ GQGPPPMVQE RFQSIISQLF 120
  121 QYRIIRCGGA VDDDMANIIV AQLLYLDAVD PTKDIVMYVN SPGGSVTAGM AIFDTMRHIR 180
  181 PDVSTVCVGL AASMGAFLLS AGTKGKRYSL PNSRIMIHQP LGGAQGGQTD IDIQANEMLH 240
  241 HKANLNGYLA YHTGQSLEKI NQDTDRDFFM SAKEAKEYGL IDGVIMNPLK ALQPLAAA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..108] deduced N/A No confident structure predictions are available.
    2 View Details [109..298] PSI-BLAST 64.39794 Clp protease, ClpP subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.46154163027498 bayes_pls_golite062009
  • CoA carboxylase activity
    		•  0.939626895227199 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  0.764444938444292 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  0.621229080200493 bayes_pls_golite062009
  • enoyl-CoA hydratase activity
    		•  0.620657548610719 bayes_pls_golite062009
  • hydrolase activity
    		•  0.534319520590169 bayes_pls_golite062009
  • ligase activity
    		•  0.32092496884003 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle