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Protein Overview: gi|15010706, gi|...

General Information:
Name(s) found: gi|23308267 [NCBI NR]
gi|20198061 [NCBI NR]
gi|20197753 [NCBI NR]
gi|18400806 [NCBI NR]
gi|15010706 [NCBI NR]
Description(s) found:
Found 14 descriptions.
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  • gi|23308267|gb|AAN18103.1| At2g25350/F13B15.1 [Arabidopsis thaliana] [NCBI NR]
  • gi|20198061|gb|AAM15377.1| Expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20197753|gb|AAM15233.1| Expressed protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18400806|ref|NP_565592.1| exonuclease-related [Arabidopsis thaliana] [NCBI NR]
  • gi|15010706|gb|AAK74012.1| At2g25350/F13B15.1 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 241 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEVSTSPT SLIDQTVVPG DVVLDLSNMT NQTIKLGSGL RQDNEVISVM RAGKLRYSKP  60
   61 NKYWVESSHK RYVPRPEDHV LGIVVDCKGE NYWIDIKGPQ LALLPVLAFE GANRRNYPKF 120
  121 EVSTLLYTRV VKTNTGMNPE LSCVDESGKA AGFGPLKDGF MFETSTGLSR MLLSSPTCPV 180
  181 LEALGKKLSF ETAFGLNGRC WVHAAAPRIV IIVANALMNS ETLSGTQQRI MVEKLLEKIS 240
  241 D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..241] PSI-BLAST 54.154902 No description for 2nn6G was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  4.49437316734899 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68444148122352 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
    		•  3.40736445988244 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
    		•  3.3097066639101 bayes_pls_golite062009
  • exoribonuclease activity
    		•  3.27082657120932 bayes_pls_golite062009
  • binding
    		•  2.8667878224392 bayes_pls_golite062009
  • mRNA binding
    		•  2.83121485081867 bayes_pls_golite062009
  • ribonuclease activity
    		•  1.89205340530046 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  1.55351486913613 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.43703138180882 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.42151567812515 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.4075750746354 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  1.35850109411274 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  1.35845277283398 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  1.35845277283398 bayes_pls_golite062009
  • exonuclease activity
    		•  1.25488463068335 bayes_pls_golite062009
  • DNA binding
    		•  1.20852534725468 bayes_pls_golite062009
  • structural molecule activity
    		•  1.06009055746922 bayes_pls_golite062009
  • protein binding
    		•  0.934192915895039 bayes_pls_golite062009
    		• 0.559294837259864 bayes_pls_golite062009
  • transcription factor activity
    		•  0.386248501195543 bayes_pls_golite062009
  • ligase activity
    		•  0.346041081217685 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.32222928997178 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.246726936182314 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.151650064901878 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.11625379846973 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.1069917291606 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle