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Protein Overview: gi|20466516, gi|...

General Information:
Name(s) found: gi|25518510 [NCBI NR]
gi|23198172 [NCBI NR]
gi|20466516 [NCBI NR]
gi|15222611 [NCBI NR]
gi|12321511 [NCBI NR]
gi|110736960 [NCBI NR]
Description(s) found:
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  • pir||D86385 hypothetical protein F2J7.6 - Arabidopsis thaliana [NCBI NR]
  • gi|23198172|gb|AAN15613.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20466516|gb|AAM20575.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15222611|ref|NP_173922.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12321511|gb|AAG50814.1|AC079281_16 hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • gi|110736960|dbj|BAF00436.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9C6M0) Hypothetical protein [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|20466516|gb|AAM20575.1| unknown protein [Arabidopsis thaliana]gi|25518510|pir||D86385 hypothetical protein F2J7.6 - Arabidopsis thalianagi|12321511|gb|AAG50814.1| hypothetical protein [Arabidopsis thaliana]gi|1 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Aspartyl protease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | aspartyl protease family protein | chr1:8959359-8960810 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • aspartic-type endopeptidase/ pepsin A [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Eukaryotic aspartyl protease family protein | chr1:8959372-8960823 REVERSE LENGTH=483 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Aspartyl protease-like protein OS=Arabidopsis thaliana GN=F2J7.6 PE=2 SV=1 [ARATH-contam.fasta]
  • Aspartyl protease family protein OS=Arabidopsis thaliana GN=F2J7.6 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 483 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPNYSFFFF IFFLTSHSSV FSRILPETST TTTSILNVAD SIHRTKYTSS FRLNQQEEQT  60
   61 HSASSSFSLQ LHSRVSVRGT EHSDYKSLTL ARLNRDTARV KSLITRLDLA INNISKADLK 120
  121 PISTMYTTEE QDIEAPLISG TTQGSGEYFT RVGIGKPARE VYMVLDTGSD VNWLQCTPCA 180
  181 DCYHQTEPIF EPSSSSSYEP LSCDTPQCNA LEVSECRNAT CLYEVSYGDG SYTVGDFATE 240
  241 TLTIGSTLVQ NVAVGCGHSN EGLFVGAAGL LGLGGGLLAL PSQLNTTSFS YCLVDRDSDS 300
  301 ASTVDFGTSL SPDAVVAPLL RNHQLDTFYY LGLTGISVGG ELLQIPQSSF EMDESGSGGI 360
  361 IIDSGTAVTR LQTEIYNSLR DSFVKGTLDL EKAAGVAMFD TCYNLSAKTT VEVPTVAFHF 420
  421 PGGKMLALPA KNYMIPVDSV GTFCLAFAPT ASSLAIIGNV QQQGTRVTFD LANSLIGFSS 480
  481 NKC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] deduced N/A No confident structure predictions are available.
    2 View Details [86..483] PSI-BLAST 74.0 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle