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Protein Overview: GDPD5_ARATH

General Information:
Name(s) found: GDPD5_ARATH [Swiss-Prot]
Description(s) found:
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  • pir||D96770 hypothetical protein F1O17.12 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|23296874|gb|AAN13192.1| putative glycerophosphodiester phosphodiesterase [Arabidopsis thaliana] [NCBI NR]
  • gi|21592460|gb|AAM64411.1| putative glycerophosphodiester phosphodiesterase [Arabidopsis thaliana] [NCBI NR]
  • gi|17381162|gb|AAL36393.1| putative glycerophosphodiester phosphodiesterase [Arabidopsis thaliana] [NCBI NR]
  • gi|15221164|ref|NP_177561.1| glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|12324904|gb|AAG52406.1|AC020579_8 putative glycerophosphodiester phosphodiesterase; 42559-40170 [Arabidopsis thaliana] [NCBI NR]
  • Glycerophosphodiester phosphodiesterase GDPD5 OS=Arabidopsis thaliana GN=GDPD5 PE=2 SV=1 [Swiss-Prot]
  • (Q9C907) Putative glycerophosphodiester phosphodiesterase, 42559-40170 [athaliana3702.FASTAC.txt]
  • putative glycerophosphodiester phosphodiesterase [Arabidopsis thaliana]gi|21592460|gb|AAM64411.1| putative glycerophosphodiester phosphodiesterase [Arabidopsis thaliana]gi|17381162|gb|AAL36393.1| putative glycerophosphodiester phosphodiesterase [Arabido [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycerophosphoryl diester phosphodiesterase family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycerophosphoryl diester phosphodiesterase family protein | chr1:27914057-27916446 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • putative glycerophosphodiester phosphodiesterase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • glycerophosphodiester phosphodiesterase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative glycerophosphodiester phosphodiesterase; 42559-40170 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | PLC-like phosphodiesterases superfamily protein | chr1:27910396-27912785 FORWARD LENGTH=392 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glycerophosphoryl diester phosphodiesterase OS=Arabidopsis thaliana GN=F1O17.12 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 392 amino acids

    Gene Ontology:
    Cellular Component: vacuole [IDA]
    Biological Process: glycerol metabolic process [IEA][ISS]
    lipid metabolic process [IEA]
    Molecular Function: glycerophosphodiester phosphodiesterase activity [IEA][ISS]
    phosphoric diester hydrolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTRCLPLI WLSLLTVCAA GRTLHPLPVK GPKTVKLQLQ TSRPYNIAHR GSNGEIPEET  60
   61 TAAYLKAIEE GTDFIETDIL SSKDGVLICF HDCILDETTN VASHKEFADR KRTYDVQGFN 120
  121 ITGFFTFDFT LKELKQLRIK QRYAFRDQQY NGMYPIITFE EFLTIARDAP RVVGIYPEIK 180
  181 NPVLMNQHVK WPGGKKFEDK VVETLKKYGY GGSYLSKKWL KKPLFIQSFA PTSLVYISNL 240
  241 TDSPKVLLID DVTMPTQDTN QTYAEITSDA YFEYIKQYVV GIGPWKDTIV PVNNNYVLAP 300
  301 TDLVKRAHAH NLQVHPYTYR NEHEFLHYNF SQDPYKEYDY WINEIGVDGL FTDFTGSLHN 360
  361 FQEWTSPLPD TSKSPRQLLS QIASLVLPYA KA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..392] PSI-BLAST 63.154902 Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • glycerophosphodiester phosphodiesterase activity
    		•  4.27697417361287 bayes_pls_golite062009
  • phosphoric diester hydrolase activity
    		•  3.6633363681844 bayes_pls_golite062009
  • phospholipase activity
    		•  3.3535603060637 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  2.89024275707278 bayes_pls_golite062009
  • phospholipase C activity
    		•  2.81479108775786 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphodiesterase activity
    		•  2.13368269358874 bayes_pls_golite062009
  • phosphoinositide phospholipase C activity
    		•  2.13368269358874 bayes_pls_golite062009
  • hydrolase activity
    		•  1.41001330359992 bayes_pls_golite062009
  • lipase activity
    		•  1.30779031242608 bayes_pls_golite062009
  • catalytic activity
    		•  1.22328099675039 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.21202479488854 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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