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Protein Overview: gi|23296614, gi|...

General Information:
Name(s) found: gi|23296614 [NCBI NR]
gi|15241622 [NCBI NR]
gi|13878039 [NCBI NR]
gi|10178284 [NCBI NR]
Description(s) found:
Found 13 descriptions.
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  • gi|23296614|gb|AAN13132.1| putative rev interacting protein mis3 [Arabidopsis thaliana] [NCBI NR]
  • gi|15241622|ref|NP_196459.1| RNA binding [Arabidopsis thaliana] [NCBI NR]
  • gi|13878039|gb|AAK44097.1|AF370282_1 putative rev interacting protein mis3 [Arabidopsis thaliana] [NCBI NR]
  • gi|10178284|emb|CAC08342.1| rev interacting protein mis3-like [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 391 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVEEIAHE EQNIEKREKK KGKHEKPKPW DDDPNIDRWT IEKFDPAWNP TGMTETSTFS  60
   61 TLFPQYREKY LQECWPRVES ALKEYGVACK LNLVEGSMTV STTRKTRDPY IIVKARDLIK 120
  121 LLSRSVPAPQ AIKILEDEVQ CDIIKIGNLV RNKERFVKRR QRLVGPNSST LKALEILTNC 180
  181 YILVQGSTVA AMGPFKGLKQ LRRIVEDCVQ NIMHPVYHIK TLMMKKELEK DPALANESWD 240
  241 RFLPTFRKKN VKQKKPKSKE KKPYTPFPPP QPPSKIDMQL ESGEYFMSDK KKSEKKWQEK 300
  301 QEKQSEKSTE NKRKRDASFL PPEEPMNNNS NANKSEDGKN DITELTNSLK SKTKELKKQK 360
  361 KTHERVNAEE YIAGPSSSAD KSSKKSKKIR D

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..62] MSA 1.082988 View MSA. No confident structure predictions are available.
    2 View Details [63..223] PSI-BLAST 29.154902 Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix
    3 View Details [224..391] PSI-BLAST 4.69897 Heavy meromyosin subfragment

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  4.49437316734899 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68444148122352 bayes_pls_golite062009
  • binding
    		•  2.8667878224392 bayes_pls_golite062009
  • mRNA binding
    		•  2.83121485081867 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.43703138180882 bayes_pls_golite062009
  • DNA binding
    		•  1.20852534725468 bayes_pls_golite062009
  • protein binding
    		•  0.934192915895039 bayes_pls_golite062009
    		• 0.559294837259864 bayes_pls_golite062009
  • transcription factor activity
    		•  0.386248501195543 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.32222928997178 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.1069917291606 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle