| Protein: | gi|23296614, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 391 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23296614, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
329.0 | [0..1] | [388..1] |
|
Region A: Residues: [1-62] |
1 11 21 31 41 51
| | | | | |
1 MAEVEEIAHE EQNIEKREKK KGKHEKPKPW DDDPNIDRWT IEKFDPAWNP TGMTETSTFS 60
61 TL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [63-223] |
1 11 21 31 41 51
| | | | | |
1 FPQYREKYLQ ECWPRVESAL KEYGVACKLN LVEGSMTVST TRKTRDPYII VKARDLIKLL 60
61 SRSVPAPQAI KILEDEVQCD IIKIGNLVRN KERFVKRRQR LVGPNSSTLK ALEILTNCYI 120
121 LVQGSTVAAM GPFKGLKQLR RIVEDCVQNI MHPVYHIKTL M
|
| Detection Method: | |
| Confidence: | 29.154902 |
| Match: | 1tuaA |
| Description: | Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 4.49437316734899 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 2.8667878224392 | bayes_pls_golite062009 |
| mRNA binding | 2.83121485081867 | bayes_pls_golite062009 |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| protein binding | 0.934192915895039 | bayes_pls_golite062009 |
| 0.559294837259864 | bayes_pls_golite062009 | |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
|
Region A: Residues: [224-391] |
1 11 21 31 41 51
| | | | | |
1 MKKELEKDPA LANESWDRFL PTFRKKNVKQ KKPKSKEKKP YTPFPPPQPP SKIDMQLESG 60
61 EYFMSDKKKS EKKWQEKQEK QSEKSTENKR KRDASFLPPE EPMNNNSNAN KSEDGKNDIT 120
121 ELTNSLKSKT KELKKQKKTH ERVNAEEYIA GPSSSADKSS KKSKKIRD
|
| Detection Method: | |
| Confidence: | 4.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
