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View Structure Prediction Details

Protein: gi|23296614, gi|...
Organism: Arabidopsis thaliana
Length: 391 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23296614, gi|....

Description E-value Query
Range
Subject
Range
gi|56785318, gi|... - gi|56785318|dbj|BAD82278.1| rev protein (42.9 kD)-like [Oryza sativa Japonica Group], gi|125571797|g...
329.0 [0..1] [388..1]

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Predicted Domain #1
Region A:
Residues: [1-62]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEVEEIAHE EQNIEKREKK KGKHEKPKPW DDDPNIDRWT IEKFDPAWNP TGMTETSTFS  60
   61 TL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [63-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPQYREKYLQ ECWPRVESAL KEYGVACKLN LVEGSMTVST TRKTRDPYII VKARDLIKLL  60
   61 SRSVPAPQAI KILEDEVQCD IIKIGNLVRN KERFVKRRQR LVGPNSSTLK ALEILTNCYI 120
  121 LVQGSTVAAM GPFKGLKQLR RIVEDCVQNI MHPVYHIKTL M

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.154902
Match: 1tuaA
Description: Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
RNA binding 4.49437316734899 bayes_pls_golite062009
nucleic acid binding 3.68444148122352 bayes_pls_golite062009
binding 2.8667878224392 bayes_pls_golite062009
mRNA binding 2.83121485081867 bayes_pls_golite062009
transcription regulator activity 1.43703138180882 bayes_pls_golite062009
DNA binding 1.20852534725468 bayes_pls_golite062009
protein binding 0.934192915895039 bayes_pls_golite062009
0.559294837259864 bayes_pls_golite062009
transcription factor activity 0.386248501195543 bayes_pls_golite062009
structure-specific DNA binding 0.32222928997178 bayes_pls_golite062009
catalytic activity 0.113112541746059 bayes_pls_golite062009
single-stranded DNA binding 0.1069917291606 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [224-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKELEKDPA LANESWDRFL PTFRKKNVKQ KKPKSKEKKP YTPFPPPQPP SKIDMQLESG  60
   61 EYFMSDKKKS EKKWQEKQEK QSEKSTENKR KRDASFLPPE EPMNNNSNAN KSEDGKNDIT 120
  121 ELTNSLKSKT KELKKQKKTH ERVNAEEYIA GPSSSADKSS KKSKKIRD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle