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Protein Overview: DEAH8_ARATH

General Information:
Name(s) found: DEAH8_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH8 OS=Arabidopsis thaliana GN=At4g16680 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 883 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: NONE FOUND
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    ATP binding [IEA]
    RNA helicase activity [ISS]
    nucleoside-triphosphatase activity [IEA]
    ATP-dependent helicase activity [IEA]
    helicase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNVPEKKI LGFPEEMNST IQFLSVEKTT CRLPVSIKFN IPKKISTKRR RISVEEEEEE  60
   61 EDENKTKLSS WEKVLSSDEI LRLREVSRRK YLTDRENKKV EELRDERKDD DDVEGYRFPD 120
  121 AYDQEGCIDQ KKRFDVAKER YCERRRSGRV VTEQEAWEDH QAQKARVRFG AKDKKQVVDG 180
  181 YEFVFDDLTG FVEESSEAET GKHRGCYSKT AAEKAREGRE FLPIHGYREE LLKLIEENQV 240
  241 LVIVGETGSG KTTQIPQYLQ EAGYTKRGKI GCTQPRRVAA MSVASRVAQE VGVKLGHEVG 300
  301 YSIRFEDCTS EKTVIKYMTD GMLLRELLIE PKLDSYSVII IDEAHERTLS TDILFALVKD 360
  361 VAKVRPDLRL IISSATLEAK KFSEYFDSAR IYLIPGRRYP VEKLFRKCPE PDYLETVIRT 420
  421 VVQIHQTEAI GDILVFLTGQ EEIETVETNL KRRMMDLGTK GSEIIICPIY SNLPTPLQAK 480
  481 VFEPAPKGTR KVVLATNIAE TSLTIDGVKY VIDPGYCKIN SYNPRTGMES LLVTPISKAS 540
  541 AAQRAGRSGR TGPGKCFRLY NIKDLEPTTI PEIQRANLAS VVLTLKSLGI QDVFNFDFMD 600
  601 PPPENALLKA LELLYALGAL DEIGEITKVG ERMVEFPVDP MLSKMIVGSE KYKCSKEIIT 660
  661 IAAMLSVGNS VFYRPKNQQV FADKARMDFY EDTENVGDHI ALLRVYNSWK EENYSTQWCC 720
  721 EKFIQSKSMK RARDIRDQLL GLLNKIGVEL TSNPNDLDAI KKAILAGFFP HSAKLQKNGS 780
  781 YRRVKEPQTV YVHPNSGLFG ASPSKWLVYH ELVLTTKEYM RHTTEMKPEW LIEIAPHYYK 840
  841 LKDIEDTRPK KTQRRIEEAS TSKVDTNKKT RTSKVDTNKK SKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..169] deduced N/A No confident structure predictions are available.
    2 View Details [170..588] PSI-BLAST 59.0 No description for 2j0qA was found.
    3 View Details [589..695] deduced N/A No confident structure predictions are available.
    4 View Details [696..883] MSA 2.617986 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle