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View Structure Prediction Details

Protein: DEAH8_ARATH
Organism: Arabidopsis thaliana
Length: 883 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for DEAH8_ARATH.

Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNVPEKKI LGFPEEMNST IQFLSVEKTT CRLPVSIKFN IPKKISTKRR RISVEEEEEE  60
   61 EDENKTKLSS WEKVLSSDEI LRLREVSRRK YLTDRENKKV EELRDERKDD DDVEGYRFPD 120
  121 AYDQEGCIDQ KKRFDVAKER YCERRRSGRV VTEQEAWEDH QAQKARVRF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [170-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAKDKKQVVD GYEFVFDDLT GFVEESSEAE TGKHRGCYSK TAAEKAREGR EFLPIHGYRE  60
   61 ELLKLIEENQ VLVIVGETGS GKTTQIPQYL QEAGYTKRGK IGCTQPRRVA AMSVASRVAQ 120
  121 EVGVKLGHEV GYSIRFEDCT SEKTVIKYMT DGMLLRELLI EPKLDSYSVI IIDEAHERTL 180
  181 STDILFALVK DVAKVRPDLR LIISSATLEA KKFSEYFDSA RIYLIPGRRY PVEKLFRKCP 240
  241 EPDYLETVIR TVVQIHQTEA IGDILVFLTG QEEIETVETN LKRRMMDLGT KGSEIIICPI 300
  301 YSNLPTPLQA KVFEPAPKGT RKVVLATNIA ETSLTIDGVK YVIDPGYCKI NSYNPRTGME 360
  361 SLLVTPISKA SAAQRAGRSG RTGPGKCFRL YNIKDLEPTT IPEIQRANLA SVVLTLKSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.0
Match: 2j0qA
Description: No description for 2j0qA was found.

Predicted Domain #3
Region A:
Residues: [589-695]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIQDVFNFDF MDPPPENALL KALELLYALG ALDEIGEITK VGERMVEFPV DPMLSKMIVG  60
   61 SEKYKCSKEI ITIAAMLSVG NSVFYRPKNQ QVFADKARMD FYEDTEN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [696-883]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGDHIALLRV YNSWKEENYS TQWCCEKFIQ SKSMKRARDI RDQLLGLLNK IGVELTSNPN  60
   61 DLDAIKKAIL AGFFPHSAKL QKNGSYRRVK EPQTVYVHPN SGLFGASPSK WLVYHELVLT 120
  121 TKEYMRHTTE MKPEWLIEIA PHYYKLKDIE DTRPKKTQRR IEEASTSKVD TNKKTRTSKV 180
  181 DTNKKSKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle