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Protein Overview: gi|25370558, gi|...

General Information:
Name(s) found: gi|25370558 [NCBI NR]
gi|15223671 [NCBI NR]
gi|11079527 [NCBI NR]
Description(s) found:
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  • pir||F96612 probable disease resistance protein RPS4 F12K22.13 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15223671|ref|NP_176093.1| Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|11079527|gb|AAG29237.1|AC079732_8 disease resistance protein RPS4, putative [Arabidopsis thaliana] [NCBI NR]
  • (Q9FVS4) Disease resistance protein RPS4, putative [athaliana3702.FASTAC.txt]
  • probable disease resistance protein RPS4 F12K22.13 [imported] - Arabidopsis thalianagi|11079527|gb|AAG29237.1| disease resistance protein RPS4, putative [Arabidopsis thaliana]gi|15223671|ref|NP_176093.1| Toll-Interleukin-Resistance (TIR) domain-containi [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Toll-Interleukin-Resistance (TIR) domain-containing protein, domain signature TIR exists, suggestive of a disease resistance protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain-containing protein | chr1:21423974-21424468 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • disease resistance protein RPS4, putative [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • transmembrane receptor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Toll-Interleukin-Resistance (TIR) domain family protein | chr1:21420309-21420803 FORWARD LENGTH=164 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Disease resistance protein RPS4, putative OS=Arabidopsis thaliana GN=F12K22.13 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 164 amino acids

    Gene Ontology:
    Cellular Component: intrinsic to membrane [IEA]
    Biological Process: signal transduction [IEA]
    innate immune response [IEA]
    defense response [ISS]
    Molecular Function: transmembrane receptor activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAISHIIQP SLMQLQPRVF INFRGEDIRY GFISHLVAAF EVHGIYFFID KYEQRGNDLT  60
   61 YLFKRIEESK IVLAIFSGKY AQSKWCLNEL ATVKKLAEEN KLKVIPIFYK VKVGDVRRQK 120
  121 GEFGRNFWNL ARISSGEEIK QWKEALEFVS HKMGLELCEN RSST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] PSI-BLAST 19.221849 Toll-like receptor 2, TLR2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.261666574457319 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.86

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle