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Protein Overview: gi|15241748, gi|...

General Information:
Name(s) found: gi|15241748 [NCBI NR]
gi|10177691 [NCBI NR]
Description(s) found:
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  • gi|15241748|ref|NP_198760.1| SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|10177691|dbj|BAB11017.1| AKin11 [Arabidopsis thaliana] [NCBI NR]
  • (Q9FLZ3) AKin11 [athaliana3702.FASTAC.txt]
  • AKin11 [Arabidopsis thaliana]gi|15241748|ref|NP_198760.1| Snf1-related protein kinase, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Snf1-related protein kinase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: SnRK1.3 | SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3); kinase | chr5:15799135-15801927 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • AKin11 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SnRK1.3 | SNF1-related protein kinase 1.3 | chr5:15781907-15784699 FORWARD LENGTH=494 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AKin11 OS=Arabidopsis thaliana GN=SnRK1.3 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 494 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: protein amino acid phosphorylation [IEA]
    Molecular Function: ATP binding [IEA]
    protein kinase activity [IEA]
    protein serine/threonine kinase activity [IEA]
    kinase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSSEKTTN KLVSILPNYR IGKTLGHGSF AKVKLALHVA TGHKVAIKIL NRSKIKNMGI  60
   61 EIKVQREIKI LRFLMHPHII RQYEVIETPN DIYVVMEYVK SGELFDYIVE KGKLQEDEAR 120
  121 HLFQQIISGV EYCHRNMIVH RDLKPENVLL DSQCNIKIVD FGLSNVMHDG HFLKTSCGSP 180
  181 NYAAPEVISG KPYGPDVDIW SCGVILYALL CGTLPFDDEN IPNVFEKIKR GMYTLPNHLS 240
  241 HFARDLIPRM LMVDPTMRIS ITEIRQHPWF NNHLPLYLSI PPLDTIDQAK KIEEEIIQNV 300
  301 VNIGFDRNHV VDSLANRIQN EATVAYHLIL DNRNQNSVPN DPFQSKFKEI SDGIFNSTLP 360
  361 VQNITSHVGH SFSALYGLKS NVKDDKTWTL GLQSQGSPYD IMTEIFKALQ NLKICWKKIG 420
  421 LYNIKCRWVR SFAYYKNHTI EDECAIILPT VIKFEIQLYK VREGKYLLDI LRIDGPQFIF 480
  481 FDLCVAFLRE LGVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] PSI-BLAST 75.30103 No description for 2fh9A was found.
    2 View Details [286..351] FFAS03 1.09 Solution structure of RSGI RUH-031, a UBA domain from human cDNA
    3 View Details [352..494] PSI-BLAST 24.0 No description for 2qlvA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  2.36949910682766 bayes_pls_golite062009
  • binding
    		•  2.36429435103114 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.22074627311461 bayes_pls_golite062009
  • protein binding
    		•  2.06619290708535 bayes_pls_golite062009
  • DNA binding
    		•  2.0124319122573 bayes_pls_golite062009
  • enzyme binding
    		•  0.973545763884891 bayes_pls_golite062009
  • kinase binding
    		•  0.968076648791321 bayes_pls_golite062009
  • hydrolase activity
    		•  0.835394858232114 bayes_pls_golite062009
  • small conjugating protein binding
    		•  0.678408535705177 bayes_pls_golite062009
  • protein kinase binding
    		•  0.608887392085144 bayes_pls_golite062009
  • ubiquitin binding
    		•  0.319972124839967 bayes_pls_golite062009
  • catalytic activity
    		•  0.2736776367506 bayes_pls_golite062009
  • damaged DNA binding
    		•  0.0421213942095382 bayes_pls_golite062009
  • transcription factor binding
    		•  0.00604949932390486 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle