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Protein Overview: gi|20197965, gi|...

General Information:
Name(s) found: gi|20197965 [NCBI NR]
gi|20197868 [NCBI NR]
gi|15228044 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|20197965|gb|AAD21712.2| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|20197868|gb|AAM15292.1| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15228044|ref|NP_181826.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLSIFLL GLILFSVSPF SGDCRTLSGK HEHYSSSLNM FNSQDTMRFS SASSSTSNDC  60
   61 GFSSKEHDPS KEHTRESVKP QSRIKQETKR TTHSVVDLQI QDLTRIKTLH ARFNKSKKQK 120
  121 NEKVRKKITS DISLVGAPEV SPGKLIATLE SGMTLGSGEY FMDVLVGTPP KHFSLILDTG 180
  181 SDLNWLQCLP CYDCFHQNGM FYDPKTSASF KNITCNDPRC SLISSPDPPV QCESDNQSCP 240
  241 YFYWYGDRSN TTGDFAVETF TVNLTTTEGG SSEYKVGNMM FGCGHWNRGL FSGASGLLGL 300
  301 GRGPLSFSSQ LQSLYGHSFS YCLVDRNSNT NVSSKLIFGE DKDLLNHTNL NFTSFVNGKE 360
  361 NSVETFYYIQ IKSILVGGKA LDIPEETWNI SSDGDGGTII DSGTTLSYFA EPAYEIIKNK 420
  421 FAEKMKENYP IFRDFPVLDP CFNVSGIEEN NIHLPELGIA FVDGTVWNFP AENSFIWLSE 480
  481 DLVCLAILGT PKSTFSIIGN YQQQNFHILY DTKRSRLGFT PTKCADI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] deduced N/A No confident structure predictions are available.
    2 View Details [93..527] PSI-BLAST 78.522879 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle