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Protein Overview: gi|15225241, gi|...

General Information:
Name(s) found: gi|3831455 [NCBI NR]
gi|25408233 [NCBI NR]
gi|15225241 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|3831455|gb|AAC69937.1| putative ubiquitin activating enzyme [Arabidopsis thaliana] [NCBI NR]
  • pir||G84732 probable ubiquitin activating enzyme [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15225241|ref|NP_180800.1| AXL (AXR1-LIKE); binding / catalytic [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 523 amino acids

    Gene Ontology:
    Cellular Component: peroxisome [IDA]
    Biological Process: auxin homeostasis [NAS]
    post-embryonic development [IMP]
    auxin mediated signaling pathway [ISS]
    protein ubiquitination [IGI]
    Molecular Function: catalytic activity [IEA][ISS]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPKTKYDR QLRIWGELGQ SALETASICL LNCGPTGSEA LKNLVIGGIG SITIVDGSKV  60
   61 EIGDLGNNFM VDAKSVGQSR AKTVCGFLQE LNDSVKANFV EENPDTLIST DPSFFSQFTL 120
  121 VIATQLVEDS MVKLDRICRE ANVMLVLARS YGLTGFVRIS VKEHTAIETK PDHSLDDLRL 180
  181 NSPWPELKSY VESIDLNVEE PAAHKHIPYV VILVKVAEEW AQHHSGNLPS TREEKNEFKD 240
  241 LVKSKMVSAD EENYKEALLA AFKVFAPTGI SQEIQDINHD SCAEVGSNSS DFWVMVAALK 300
  301 EFISNEGGGE VPLEGSMPDM ISSTEHYINL QKIYHSKAEA DFLSMEQRVK SILVKVGQDP 360
  361 SSISKPTIKS FCKNARKLKV CRYRTIEDEF KSPSTTELHK YLADENYSGA IGFYILLRAV 420
  421 DRFAGTYKKF PGQFDGSTDE DASQLKTIAL SLLSEMGCDG YELQEELYNE MCRFGAAEIH 480
  481 VVAALIGGIT SQEVIKLITK QFVPKRGTFI FNGIDHKSQS LTL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..523] PSI-BLAST 134.0 Structure of APPBP1-UBA3-Ubc12N26: a unique E1-E2 interaction required for optimal conjugation of the ubiquitin-like protein NEDD8

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • small protein activating enzyme activity
    		•  5.883593664369 bayes_pls_golite062009
  • NEDD8 activating enzyme activity
    		•  4.6334061288737 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  1.84216910649062 bayes_pls_golite062009
  • binding
    		•  1.66028321721112 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.63522698057369 bayes_pls_golite062009
  • protein binding
    		•  1.40907622346701 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.31244773198273 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.27535252106053 bayes_pls_golite062009
  • catalytic activity
    		•  1.22201444897049 bayes_pls_golite062009
  • NEDD8 ligase activity
    		•  1.11310449351601 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.995905648772847 bayes_pls_golite062009
  • transferase activity
    		•  0.680338489823338 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.302798969355962 bayes_pls_golite062009
  • URM1 activating enzyme activity
    		•  0.207228630005671 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle