YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: H2B2_ARATH

General Information:
Name(s) found: H2B2_ARATH [Swiss-Prot]
Description(s) found:
Found 16 descriptions.
SHOW ALL
  • Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 243 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    nucleosome [IEA]
    Biological Process: nucleosome assembly [IEA]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV  60
   61 EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV EVRDEPSPQP PETPASKSEG 120
  121 TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM 180
  181 GDMFERIAQE AARLSDYTKR RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS 240
  241 RKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] MSA 9.113997 View MSA. No confident structure predictions are available.
    2 View Details [112..243] PSI-BLAST 35.0 Histone H2B

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.73700145395396 bayes_pls_golite062009
  • DNA binding
    		•  1.04127970884713 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.86554830065808 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.57702121108343 bayes_pls_golite062009
  • protein binding
    		•  0.260428734715028 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle