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Protein Overview: SETH3_ARATH

General Information:
Name(s) found: SETH3_ARATH [Swiss-Prot]
Description(s) found:
Found 13 descriptions.
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  • Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 350 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: carbohydrate metabolic process [IEA]
    Molecular Function: sugar binding [IEA]
    isomerase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLPPPSLD FSSIDHNSLK NGGSSHQEIS HDNLLNLFKS QQDLLNHFFK HLDLSQTLDF  60
   61 SRILLSTTGT VFFTGVGKSA FVANKVSQTL VSLSFRSSFL SPLDALHGDI GALSPRDVLV 120
  121 FFSKSGATEE LLRLVPCARA KGAFLVSLTS VSGNPLAGVC DMNVHLPLQR ELCPFNLAPV 180
  181 TSTAIQMVFG DTIAVALMAA RNLSKEEYAA NHPAGRIGKS LIFKVKDVMK KQEELPVCKE 240
  241 GDLIMDQLVE LTSKGCGCLL VVDEHSRLIG TFTDGDLRRT LKASGEAIFK LSVGEMCNRK 300
  301 PRTIGPETMA VEAMKKMESP PSPVQFLPVV NEDNTLIGIV TLHGLVSAGL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..350] PSI-BLAST 46.69897 ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH GLUCOSAMINE 6-PHOSPHATE

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • D-sedoheptulose 7-phosphate isomerase activity
    		•  1.86053765663232 bayes_pls_golite062009
  • catalytic activity
    		•  1.5278037255884 bayes_pls_golite062009
  • glutamine-fructose-6-phosphate transaminase (isomerizing) activity
    		•  1.11549102314657 bayes_pls_golite062009
  • glucose-6-phosphate isomerase activity
    		•  0.990057055836447 bayes_pls_golite062009
  • isomerase activity
    		•  0.875614547872629 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  0.718035369881213 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  0.543772038478781 bayes_pls_golite062009
  • binding
    		•  0.146189542470011 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle