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Protein Overview: RDR1_ARATH

General Information:
Name(s) found: RDR1_ARATH [Swiss-Prot]
Description(s) found:
Found 12 descriptions.
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  • RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1107 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: posttranscriptional gene silencing [ISS]
    response to salicylic acid stimulus [IEP]
    response to virus [IMP]
    positive regulation of posttranscriptional gene silencing [IMP]
    Molecular Function: nucleic acid binding [ISS]
    RNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTIQVFGF PNGVSAEEVK KFLERLTGSG TVYAIKVRQP KKGGPRVYAI VQFTSERHTR  60
   61 LIITAAAERL YYGRSYLKAF EVEQDIVPKP RASLHTISGL KMFFGCQVST KKFLTLWSAQ 120
  121 DVCVSFGIGM RKLHFSFSWY QKDYRLELSY ENIWQIDLHS PQGRSSKFLV IQVIGAPKIF 180
  181 EKEDQPINLL FGIMDFYSDG SDEQWIRTTD FTSSSCIGQS TAFCLELPVH LNVPDFRENF 240
  241 ANYAEHRASS FLIESGSSYS SNANTLVPVV DPPPGFSLPF EILFKLNTLV QNACLSGPAL 300
  301 DLDFYRLLNQ KKYDRALIDH CLEKLFHLGE CCYEPAHWLR DEYKKWISKG KLPLSPTISL 360
  361 DDGLVYMYRV QVTPARVYFS GPEVNVSNRV LRHYSKYINN FLRVSFVDED LEKVRSMDLS 420
  421 PRSSTQRRTK LYDRIYSVLR DGIVIGDKKF EFLAFSSSQL RENSAWMFAP IDRITAAHIR 480
  481 AWMGDFDHIR NVAKYAARLG QSFSSSRETL NVRSDEIEVI PDVEIISLGT RYVFSDGIGK 540
  541 ISAEFARKVA RKCGLTEFSP SAFQIRYGGY KGVVAVDPNS SKKLSLRKSM SKFESENTKL 600
  601 DVLAWSKYQP CYMNRQLITL LSTLGVTDSV FEKKQREVVD RLDAILTHPL EAHEALGLMA 660
  661 PGENTNILKA LILCGYKPDA EPFLSMMLQN FRASKLLELR TKTRIFISGG RSMMGCLDET 720
  721 RTLEYGQVVV QYSDPMRPGR RFIITGPVVV AKNPCLHPGD VRVLQAVNVP ALNHMVDCVV 780
  781 FPQKGLRPHP NECSGSDLDG DIYFVCWDQE LVPPRTSEPM DYTPEPTQIL DHDVTIEEVE 840
  841 EYFANYIVND SLGIIANAHT AFADKEPLKA FSDPCIELAK KFSTAVDFPK TGVAAVIPQH 900
  901 LYVKEYPDFM EKPDKPTYES KNVIGKLFRE VKERAPPLIS IKSFTLDVAS KSYDKDMEVD 960
  961 GFEEYVDEAF YQKANYDFKL GNLMDYYGIK TEAEILSGGI MRMSKSFTKR RDAESIGRAV1020
 1021 RALRKETLSL FNASEEEENE SAKASAWYHV TYHSSYWGLY NEGLNRDHFL SFAWCVYDKL1080
 1081 VRIKKTNLGR RQRQETLERL DHVLRFG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] PSI-BLAST 8.045757 No description for 2g4bA was found.
    2 View Details [159..332] deduced N/A No confident structure predictions are available.
    3 View Details [333..1107] PSI-BLAST 159.0 No description for 2j7nA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.84

    Source: Reynolds et al. (2008)

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    Created and Maintained by: Michael Riffle