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Protein Overview: SYHM_ARATH

General Information:
Name(s) found: SYHM_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|7798998|emb|CAB90937.1| histidyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|3659909|gb|AAC61600.1| histidyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|21436315|gb|AAM51327.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|15810389|gb|AAL07082.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana] [NCBI NR]
  • gi|15231337|ref|NP_190196.1| ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase [Arabidopsis thaliana] [NCBI NR]
  • pir||T49251 histidine-tRNA ligase (EC 6.1.1.21) precursor, plastid [similarity] - Arabidopsis thaliana [NCBI NR]
  • Histidine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g46100 PE=2 SV=1 [Swiss-Prot]
  • (O82413) Putative histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) [athaliana3702.FASTAC.txt]
  • putative histidyl-tRNA synthetase [Arabidopsis thaliana]gi|15810389|gb|AAL07082.1| putative histidyl-tRNA synthetase [Arabidopsis thaliana]gi|7798998|emb|CAB90937.1| histidyl-tRNA synthetase [Arabidopsis thaliana]gi|3659909|gb|AAC61600.1| histidyl-tRNA [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Histidyl-tRNA synthetase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATHRS1 | ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase | chr3:16939429-16941969 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • histidyl-tRNA synthetase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • putative histidyl-tRNA synthetase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase 1 | chr3:16928444-16930984 REVERSE LENGTH=486 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Histidyl-tRNA synthetase OS=Arabidopsis thaliana GN=F12M12_70 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 486 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    mitochondrion [IDA]
    Biological Process: histidyl-tRNA aminoacylation [ISS]
    Molecular Function: histidine-tRNA ligase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAIHIVTTR LSSSFRPILL LDLVSSCSPP RQFSIPRRLI CAAANGGGRS GSIVAPLVTE  60
   61 EDFHKKIDVN PPKGTRDFPP EDMRLRNWLF NHFKEVSRLY GYEEVDYPVL ETEALFIRKA 120
  121 GEEIRDQLYC FEDRGNRRVA LRPELTPSLA RLVIQKGKSV SLPLKWFAIG QCWRYERMTR 180
  181 GRRREHYQWN MDIIGVPQVT AEAELISSIV TFFKRIGITA SDVGFKVSSR KVLQELLKKY 240
  241 GVPEDLFGRV CIIIDKIEKI PIDEIKKELG FTGISEDAIE QLLQVLSVKS LDDLEDIIGG 300
  301 AGEAIADLKQ LFSLAEKFGY SEWIQFDASV VRGLAYYTGI VFEGFDRKGK LRAICGGGRY 360
  361 DRLLSTYGGD DFPACGFGFG DAVIVELLKE KDLLPELGQE VENIVCALDK DLQGAAATVA 420
  421 TALRDKGQTV DLVLESKPLK WVFKRAARVN ARRLVLVGKT EWEDGSVSVK VLSSGEQFQV 480
  481 KLSDLE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..65] PSI-BLAST 36.69897 No description for 2dq3A was found.
    2 View Details [66..486] PSI-BLAST 56.0 Crystal structure of histidyl-tRNA synthetase from Thermoplasma acidophilum

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ligase activity, forming carbon-oxygen bonds
    		•  7.89468709683036 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  7.89468709683036 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  7.88410036819636 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  5.91343220471745 bayes_pls_golite062009
  • phenylalanine-tRNA ligase activity
    		•  2.76416144738864 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.17047432052132 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.07594942154162 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • binding
    		•  0.311307565529325 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.00572514744734753 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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