YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: MBD7_ARATH

General Information:
Name(s) found: MBD7_ARATH [Swiss-Prot]
Description(s) found:
Found 14 descriptions.
SHOW ALL
  • Methyl-CpG-binding domain-containing protein 7 OS=Arabidopsis thaliana GN=MBD7 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 306 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    chromocenter [IDA]
    Biological Process: NONE FOUND
    Molecular Function: DNA binding [ISS]
    [NOT]cytosine C-5 DNA demethylase activity [IDA]
    methyl-CpG binding [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTRSSSSPS ANHRRETQLQ IADPTSFCGK IMPGWTVVNR PRSSNNGVVD TYFIEPGTGR  60
   61 QFSSLEAIHR HLAGEVNDRR LTRAGSFFQD KTRVYEGSRT KQDHCGVEYA SKGFRLPRGW 120
  121 SVEEVPRKNS HYIDKYYVER KTGKRFRSLV SVERYLRESR NSIEQQLRVL QNRRGHSKDF 180
  181 RLPDGWIVEE KPRRSSSHID RSYIEPGTGN KFRSMAAVER YLISVGNITL DSVSMVHSER 240
  241 LPLLMNRNGI RFQSEVIDPN PPKKVKWVLT GSGGNMFTAN VRGSNVSSLV KHTWSEAFVS 300
  301 LIEDRS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] PSI-BLAST 20.522879 Solution structure of the matrix attachment region-binding domain of chicken MeCP2
    2 View Details [120..306] FFAS03 2.5 Solution structure of the matrix attachment region-binding domain of chicken MeCP2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.339357445627225 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.236830846471166 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle