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Protein Overview: gi|15240057, gi|...

General Information:
Name(s) found: gi|9758555 [NCBI NR]
gi|21281087 [NCBI NR]
gi|19347889 [NCBI NR]
gi|15240057 [NCBI NR]
Description(s) found:
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  • gi|9758555|dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|21281087|gb|AAM45065.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|19347889|gb|AAL86001.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15240057|ref|NP_199209.1| nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (Q9FND0) Gb|AAD20086.1 (Hypothetical protein) [athaliana3702.FASTAC.txt]
  • unknown protein [Arabidopsis thaliana]gi|19347889|gb|AAL86001.1| unknown protein [Arabidopsis thaliana]gi|9758555|dbj|BAB09056.1| unnamed protein product [Arabidopsis thaliana]gi|15240057|ref|NP_199209.1| nuclear transport factor 2 (NTF2) family protei [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nuclear transport factor 2 (NTF2) family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | chr5:17706381-17708880 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / nucleic acid binding / protein transporter [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Gb|AAD20086.1 OS=Arabidopsis thaliana GN=At5g43960 PE=2 SV=1 [ARATH-contam.fasta]
  • Gb|AAD20086.1 OS=Arabidopsis thaliana GN=At5g43960 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 450 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: nucleocytoplasmic transport [ISS]
    transport [IEA]
    Molecular Function: nucleic acid binding [IEA]
    nucleotide binding [IEA]
    RNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM  60
   61 VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR RSFVQTFFLA PQEKGYFVLS 120
  121 DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD 180
  181 LVDKYSLQED QHQPQHEDYE DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS 240
  241 ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY 300
  301 GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY 360
  361 AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR GARRGGGRGR GGYPTEAPRG 420
  421 RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] PSI-BLAST 34.69897 Nuclear transport factor-2 (NTF2)
    2 View Details [129..220] deduced N/A No confident structure predictions are available.
    3 View Details [221..450] PSI-BLAST 40.221849 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein binding
    		•  1.74084472095013 bayes_pls_golite062009
  • binding
    		•  1.29138202593822 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.983337869604082 bayes_pls_golite062009
  • kinase activity
    		•  0.871357091497469 bayes_pls_golite062009
  • protein serine/threonine kinase activity
    		•  0.797931524291551 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.662760637049546 bayes_pls_golite062009
  • protein kinase activity
    		•  0.622060011038738 bayes_pls_golite062009
  • transporter activity
    		•  0.55283159394909 bayes_pls_golite062009
  • protein transporter activity
    		•  0.300724614509129 bayes_pls_golite062009
  • transferase activity
    		•  0.250005906709975 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0725168535072961 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • nucleic acid binding
    		•  2.43517729895315 bayes_pls_golite062009
  • binding
    		•  2.41127885655304 bayes_pls_golite062009
  • RNA binding
    		•  1.96321378335448 bayes_pls_golite062009
  • protein binding
    		•  1.52056358240529 bayes_pls_golite062009
  • mRNA binding
    		•  0.79383576791259 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.681978520687901 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.494091580976874 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  0.257073928625242 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle