| Protein: | gi|15240057, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 450 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240057, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
242.0 | [0..1] | [450..69] |
|
Region A: Residues: [1-128] |
1 11 21 31 41 51
| | | | | |
1 MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM 60
61 VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR RSFVQTFFLA PQEKGYFVLS 120
121 DVFLFVDE
|
| Detection Method: |  |
| Confidence: | 34.69897 |
| Match: | 1askA |
| Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.74084472095013 | bayes_pls_golite062009 |
| binding | 1.29138202593822 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.983337869604082 | bayes_pls_golite062009 |
| kinase activity | 0.871357091497469 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.797931524291551 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.662760637049546 | bayes_pls_golite062009 |
| protein kinase activity | 0.622060011038738 | bayes_pls_golite062009 |
| transporter activity | 0.55283159394909 | bayes_pls_golite062009 |
| protein transporter activity | 0.300724614509129 | bayes_pls_golite062009 |
| transferase activity | 0.250005906709975 | bayes_pls_golite062009 |
| nucleic acid binding | 0.0725168535072961 | bayes_pls_golite062009 |
|
Region A: Residues: [129-220] |
1 11 21 31 41 51
| | | | | |
1 GTVYYHQPSY LSEIKHEAQL NPPTRHPDPQ VSDYVLEEEA SDYVNAVQIK DDLVDKYSLQ 60
61 EDQHQPQHED YEDEVAIEET PREEVAVDVV HE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [221-450] |
1 11 21 31 41 51
| | | | | |
1 HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ 60
61 LAAPLAPIQQ SNSSTYVSDY GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG 120
121 TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR 180
181 GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR
|
| Detection Method: | |
| Confidence: | 40.221849 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 2.43517729895315 | bayes_pls_golite062009 |
| binding | 2.41127885655304 | bayes_pls_golite062009 |
| RNA binding | 1.96321378335448 | bayes_pls_golite062009 |
| protein binding | 1.52056358240529 | bayes_pls_golite062009 |
| mRNA binding | 0.79383576791259 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.681978520687901 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.494091580976874 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.257073928625242 | bayes_pls_golite062009 |
