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Protein Overview: gi|2832704, gi|7...

General Information:
Name(s) found: gi|7488396 [NCBI NR]
gi|7268623 [NCBI NR]
gi|2832704 [NCBI NR]
gi|15236830 [NCBI NR]
Description(s) found:
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  • pir||T04932 translation regulator GCD6 homolog T9A21.150 - Arabidopsis thaliana [NCBI NR]
  • gi|7268623|emb|CAB78832.1| initiation factor-2Bepsilon-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|2832704|emb|CAA16802.1| initiation factor-2Bepsilon-like protein [Arabidopsis thaliana] [NCBI NR]
  • gi|15236830|ref|NP_193564.1| eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • (O49733) Initiation factor-2BEPSILON-like protein [athaliana3702.FASTAC.txt]
  • initiation factor-2Bepsilon-like protein [Arabidopsis thaliana]gi|2832704|emb|CAA16802.1| initiation factor-2Bepsilon-like protein [Arabidopsis thaliana]gi|7488396|pir||T04932 translation regulator GCD6 homolog T9A21.150 - Arabidopsis thalianagi|152368 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 EIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein | chr4:10118863-10120992 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • initiation factor-2Bepsilon-like protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • translation initiation factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Trimeric LpxA-like enzyme | chr4:10118852-10120981 FORWARD LENGTH=709 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Initiation factor-2Bepsilon-like protein OS=Arabidopsis thaliana GN=T9A21.150 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 709 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: biosynthetic process [IEA]
    regulation of translational initiation [ISS]
    Molecular Function: translation initiation factor activity [ISS]
    nucleotidyltransferase activity [IEA]
    transferase activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAQKKPAAA KVREDSEDLS RQRLQAILLA DSFTTQFRSI TLERPKVLLP IVNIPMIDYT  60
   61 LAWLESAGIE EVFVFCCAHS SQIIDYLKKS EWYTRPNPNL LVRTIVSHNS TSVGDALRYI 120
  121 YEQQTETSQI QGDFVLVSGD TVSNMPLADL IQQHRDRKKK DEKAIMTMVF KKQSRLGIGS 180
  181 DQLFVAVDPL TKQLLHYEEC NSRGGDFCLD KSLLDSTVLC SDMQDCYIDI CSPEVLSLFE 240
  241 DNFDYQHMRR HFVNGLLVDD IMGYKIFTHE IQSSCYAARI DNLRSYDTVS KDIIQRWTYP 300
  301 YVPNIDFSGN RPVKLGRRGI YRASDAVQSH TADVGASTVI GYGTKIGNGG KIYNSVIGNG 360
  361 CCIGSNVVIQ GSYIWNNVTI EDGCEIRNAI VCDGVKVRAG AVLQPGVVLS FSVVVGRDFV 420
  421 VPAYSKVSLL QQPTTEDSDE ELEYADSSSG TADHSSGLNN LQIESKASEL GPDGAGYIWE 480
  481 ICDSAHDEEW KHSVVPIPMD KLADITGAMD DDDIEDDIVV PPSGELKSDT DIINTDANDS 540
  541 YGDFEREVEE EFLSAVEKDN KADIVIPLIN SHRLAYNMDS ADCAGAVFYS MMRLAVKSPH 600
  601 NSATELYRNA MGVITKWKGV LGFYLKQTDA QIEVIMKFEE MCQESEELSP LFAKLLPFLY 660
  661 DKDVVQEDAI LRWGEEKAGA DDCDKVYLNK CESFIKWLKE ASEEEEEDS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..496] PSI-BLAST 72.09691 N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain; N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
    2 View Details [497..709] PSI-BLAST 32.0 CRYSTAL STRUCTURE OF THE CATALYTIC FRAGMENT OF EUKARYOTIC INITIATION FACTOR 2B EPSILON

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity
    		•  2.17535315350752 bayes_pls_golite062009
  • catalytic activity
    		•  1.88676710996045 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.86990263440735 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.49149681135671 bayes_pls_golite062009
  • binding
    		•  1.09657219604879 bayes_pls_golite062009
  • protein binding
    		•  0.967722609820275 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  0.796949457473955 bayes_pls_golite062009
  • acyltransferase activity
    		•  0.741838450922005 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  0.717805296858439 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  0.619458068514795 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.555398952276587 bayes_pls_golite062009
  • O-acyltransferase activity
    		•  0.319932817519902 bayes_pls_golite062009
    2
    Term Confidence Notes
  • translation initiation factor activity
    		•  9.37171190530754 bayes_pls_golite062009
  • translation regulator activity
    		•  5.35226950142169 bayes_pls_golite062009
  • binding
    		•  3.0667965351474 bayes_pls_golite062009
  • protein binding
    		•  2.78733902345842 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.34284977509828 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.76231475025891 bayes_pls_golite062009
  • RNA cap binding
    		•  1.73309326409609 bayes_pls_golite062009
  • DNA binding
    		•  1.62032607987786 bayes_pls_golite062009
  • transcription activator activity
    		•  1.23830945970239 bayes_pls_golite062009
  • transcription factor activity
    		•  0.923253759652909 bayes_pls_golite062009
  • structural molecule activity
    		•  0.908029258648777 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.803700928110921 bayes_pls_golite062009
  • mRNA binding
    		•  0.46864854653143 bayes_pls_golite062009
  • RNA binding
    		•  0.40024158562931 bayes_pls_golite062009
  • protein phosphatase binding
    		•  0.18767619609331 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle