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Protein Overview: gi|7267766, gi|4...

General Information:
Name(s) found: gi|7488388 [NCBI NR]
gi|7267766 [NCBI NR]
gi|4539446 [NCBI NR]
gi|39545886 [NCBI NR]
gi|3600041 [NCBI NR]
gi|15236883 [NCBI NR]
Description(s) found:
Found 16 descriptions.
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  • pir||T01909 transcription initiation factor IIB homolog T12H20.13 - Arabidopsis thaliana [NCBI NR]
  • gi|7267766|emb|CAB81169.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|4539446|emb|CAB40034.1| putative protein [Arabidopsis thaliana] [NCBI NR]
  • gi|39545886|gb|AAR28006.1| TFIIB6 [Arabidopsis thaliana] [NCBI NR]
  • gi|3600041|gb|AAC35529.1| contains similarity to transcription factor TFIIB repeat domains (Pfam: transcript_fac2.hmm, score: 49.16) [Arabidopsis thaliana] [NCBI NR]
  • gi|15236883|ref|NP_192806.1| transcription factor IIB (TFIIB) family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 182 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    transcription factor complex [IEA]
    Biological Process: regulation of transcription, DNA-dependent [IEA]
    transcription initiation [IEA]
    regulation of transcription [IEA]
    translational initiation [IEA]
    Molecular Function: translation initiation factor activity [IEA]
    zinc ion binding [IEA]
    protein binding [IEA]
    RNA polymerase II transcription factor activity [ISS]
    transcription regulator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEDGICLEC KRPTETVVNY KNGDTICIEC GHVIENNIID DLDGASTNPN LKSGHLPTII  60
   61 FKLSGKSSSL ASKLRRTQNE MIKNKQEEDV IKIAYAEIER MTEALGLTFG ISNTACKILS 120
  121 KLDKKNLRGG KSLRGLCAAS VSRACRQVNI PKTLKEISAV ANVDMKEINK AVKLLGDSFG 180
  181 TI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..83] FFAS03 2.54 RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures)
    2 View Details [84..182] PSI-BLAST 30.0 Transcription factor IIB (TFIIB), core domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle