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View Structure Prediction Details

Protein: gi|7267766, gi|4...
Organism: Arabidopsis thaliana
Length: 182 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7267766, gi|4....

Description E-value Query
Range
Subject
Range
TF2B_ARCFU - Transcription initiation factor IIB OS=Archaeoglobus fulgidus GN=tfb PE=3 SV=1
TF2B_ARCFU - Transcription initiation factor IIB OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 ...
211.0 [0..2] [180..25]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEDGICLEC KRPTETVVNY KNGDTICIEC GHVIENNIID DLDGASTNPN LKSGHLPTII  60
   61 FKLSGKSSSL ASKLRRTQNE MIK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.54
Match: 1rlyA
Description: RDC-derived models of the zinc ribbon domain of human general transcription TFIIB (zinc bound structures)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [84-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKQEEDVIKI AYAEIERMTE ALGLTFGISN TACKILSKLD KKNLRGGKSL RGLCAASVSR  60
   61 ACRQVNIPKT LKEISAVANV DMKEINKAVK LLGDSFGTI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1c9bA
Description: Transcription factor IIB (TFIIB), core domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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