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Protein Overview: gi|25407941, gi|...

General Information:
Name(s) found: gi|4510415 [NCBI NR]
gi|25407941 [NCBI NR]
gi|15226315 [NCBI NR]
Description(s) found:
Found 12 descriptions.
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  • gi|4510415|gb|AAD21501.1| putative chloroplast nucleoid DNA binding protein [Arabidopsis thaliana] [NCBI NR]
  • pir||F84679 hypothetical protein At2g28010 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|15226315|ref|NP_180368.1| aspartyl protease family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 396 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: proteolysis [IEA][ISS]
    Molecular Function: aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLATTIIVL FLQISLCFLF TTTASPPHGF TMDLIHRRSN ASSRVSNTQS GSSPYANTVF  60
   61 DNSVYLMKLQ VGTPPFEIQA IIDTGSEITW TQCLPCVHCY EQNAPIFDPS KSSTFKEKRC 120
  121 DGHSCPYEVD YFDHTYTMGT LATETITLHS TSGEPFVMPE TIIGCGHNNS WFKPSFSGMV 180
  181 GLNWGPSSLI TQMGGEYPGL MSYCFSGQGT SKINFGANAI VAGDGVVSTT MFMTTAKPGF 240
  241 YYLNLDAVSV GNTRIETMGT TFHALEGNIV IDSGTTLTYF PVSYCNLVRQ AVEHVVTAVR 300
  301 AADPTGNDML CYNSDTIDIF PVITMHFSGG VDLVLDKYNM YMESNNGGVF CLAIICNSPT 360
  361 QEAIFGNRAQ NNFLVGYDSS SLLVSFSPTN CSALWN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..396] PSI-BLAST 68.39794 REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.01508543827677 bayes_pls_golite062009
  • hydrolase activity
    		•  0.77554493777157 bayes_pls_golite062009
  • peptidase activity
    		•  0.68518523369811 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  0.43925265235199 bayes_pls_golite062009
  • endopeptidase activity
    		•  0.43264884039584 bayes_pls_golite062009
  • aspartic-type endopeptidase activity
    		•  0.30585066730542 bayes_pls_golite062009
  • aspartic-type peptidase activity
    		•  0.30585066730542 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle